Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq83 221 1e-51 seq287 131 1e-24 seq5361 120 2e-21 seq446 93.3 3e-13 seq279 87.8 1e-11 >seq83 Length=20893 Score = 221 bits (244), Expect = 1e-51 Identities = 383/553 (69%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || |||||||| | || || |||||| |||||||||||||||||| |||| | | || Sbjct 15618 ATTGGTATAGACCTTGGGACGACATATTCTTGTGTTGGTGTTTGGCAGAATGATCAGGTG 15559 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| | || |||||||| | | || |||||||| ||||| |||||| || Sbjct 15558 GAAATTATTTCAAACGATCAAGGACATCGGACGACTCCATCATATGTAGCTTTCAATGAT 15499 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | || |||| || || |||||| ||||| || ||||| || |||||| Sbjct 15498 ACGGAGCGACTAATTGGAGACGCTGCAAAAAGTCAAGTTGCTTTGAATCCCACAAATACT 15439 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||||||| || || ||| |||| || ||| ||||| ||| | || ||| ||| Sbjct 15438 ATTTTTGACGCAAAGCGTCTAATCGGGCGAACTTTTACAGATCCCGTGGTACAGAATGAT 15379 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GAAAACCTTATATTGAAGCTA 550292 | | || ||||| || || | ||| | | | || || | | ||| ||| Sbjct 15378 TTAACACACTGGCCATTTAAAGTATTTAGCGGAGCAGGTGATAAACCGA---TGATTCTA 15322 Query 550293 CTCATGAA-GGATCTGTTAA-----ACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | |||| || || || ||| ||||| | || |||| || || ||||| | Sbjct 15321 GT--TGAATGGCGAGGTGAAGAGAGACATTTTTCTGCTGAGGAAATATCTTCAATGGTGT 15264 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 || || |||||| || || | | | | ||| || ||| | |||||||| Sbjct 15263 TATCAAAGATGAAAACAATTGCTGAAGACTATTTGGGTGAATCAGTCTCTAGTGCAGTAA 15204 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| ||||| ||||| ||||| | ||||||||| | || ||||||||||| ||| Sbjct 15203 TTACTGTTCCAGCGTATTTCAATGATGCTCAACGTCAATCAACGAAAGATGCTGGCAGTA 15144 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||||||||| | ||| | || ||||| ||||| || ||||||||||| | || |||| Sbjct 15143 TTGCTGGACTTCAAGTTTTACGAATTATTAATGAGCCAACTGCTGCTGCTATAGCCTATG 15084 Query 550527 GACTTGATAAACA 550539 | | |||||||| Sbjct 15083 GTTTGGATAAACA 15071 Score = 113 bits (124), Expect = 4e-19 Identities = 260/387 (67%), Gaps = 10/387 (3%) Strand=Plus/Minus Query 552108 AAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG 552167 ||| |||||||| | || ||||| ||||| || | | ||||| | | || ||| Sbjct 14434 AAATTACATGAAGTGGTACTTGTAGGTGGTTCATCTCGGATTCCAATGGT--GCAGAATC 14377 Query 552168 TTAAGTTC----TTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGC 552223 || ||| ||||||||||||||| ||| | ||| | |||||| |||||| || Sbjct 14376 TTC--TTCAAGATTATTTCAATGGTAAGAAACTGAATCAGTCGATTAATCAAGATGAAGC 14319 Query 552224 TGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG-ACAAACTGATGAAAAAC 552282 |||||| ||||| || || ||||||| ||||| || ||| | || | ||||| Sbjct 14318 TGTTGCATATGGAGCTGCTGTTCAAGCTGCTATACTCGATGGTGTTACCTCTTCCAAAAC 14259 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | | || || |||| ||||||| ||||| |||| | ||| | |||| | ||| | Sbjct 14258 -AGAGAAACTTTTACTATTAGATGTGGCTCCTTTATCCGTCGGTGTTCAAACGGCTGGTG 14200 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || ||||||| || |||| | ||||||| ||| ||||| | || | || Sbjct 14199 GTGTTATGACCAAAATTATTCTTCGAAATACGACTCTTCCTGCACGAGTTTCGCAAACAT 14140 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 ||||||| | |||| | |||| || |||| || | |||||||| || ||| Sbjct 14139 TTTCTACAAACGAAGATTACCAAAGTGGTGTTGATGTTTTGGTGTTTGAAGGGGAGAGAG 14080 Query 552463 AATTCACTAAAGATAATAATCAACTTG 552489 || | || || |||||||| |||||| Sbjct 14079 AAATGACAAAGGATAATAACAAACTTG 14053 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 361699 TCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAG 361758 ||||| |||||| |||| | |||||| ||||| || ||||| ||| | ||| | || Sbjct 15077 TCCAA-ACCATAGGCTATAGCAGCAGCAGTTGGCTCATTAATAATTCGTAAAACTTGAAG 15135 Query 361759 TCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGG 361818 ||| || || | |||||| || | ||||||||| |||||||| ||||| || || Sbjct 15136 TCCAGCAATACTGCCAGCATCTTTCGTTGATTGACGTTGAGCATCATTGAAATACGCTGG 15195 Query 361819 AACAGTAATCACTGC 361833 ||||||||| ||||| Sbjct 15196 AACAGTAATTACTGC 15210 >seq287 Length=11809 Score = 131 bits (144), Expect = 1e-24 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||||| | | |||| || || || || || ||||||||||| || |||||| | ||| Sbjct 513 GAAGTAAAGAATGCTGTGATTACAGTTCCTGCATATTTTAACGATAGTCAACGTAATGCT 454 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 |||||||||||||| ||||||||||| |||||||| | | |||||||||||||||||| Sbjct 453 ACTAAAGATGCTGGTCGTATTGCTGGCCTTAATGTCATGAGAATTATCAATGAACCTACT 394 Query 550508 GCTGCTGCACTTGCATATGG 550527 ||||| || | |||||||| Sbjct 393 GCTGCAGCTATAGCATATGG 374 >seq5361 Length=1785 Score = 120 bits (132), Expect = 2e-21 Identities = 332/502 (66%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||||||||||||||||| ||| ||| |||| | | | || | | || ||| Sbjct 88 ATTGAAGTAGATTCATTATATGACGGACTTGACTTTTCACTTCAAATCACTCGTGCTAAA 147 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 |||||| | || | || |||| ||| ||||| || |||||| ||| || ||| Sbjct 148 TTTGAACAGATGAACATGGCACTTTTTAAAAAGACAATGGATCCAGTAAAACGTGTGTTA 207 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAG---TACATGAAATTGTGCTTGTTGGTGGATCT 552140 ||| |||| || || | | |||| | ||||| |||| ||||||||||| || Sbjct 208 GATGATGCAAAA--TG-TACAACAAAAGATGTTGATGAAGTTGTTCTTGTTGGTGGTTCG 264 Query 552141 ACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAA 552199 ||| | ||||| ||| | | | |||||| || || ||| | || ||| || Sbjct 265 ACACGTATTCCAAAAGTACAAGCCATGTTACAGGAGTTTTTTGGA-GGAAAACCTCCGAA 323 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | ||||| ||||||| ||||| ||||| || | ||||| | ||||||||||| ||||| Sbjct 324 TAAAAGTATTAATCCTGATGAAGCTGTAGCATGGGGTGCGACGATTCAAGCAGCAATTCT 383 Query 552260 TTCTGGACAAAC---TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 || ||||| || |||| || ||||| || | | |||||||| ||||| Sbjct 384 ---TGATCAAACTATTGGTGAAGCTGGTGAAGATATTTTATTACTTGATGTTACGCCTCT 440 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 || | || | ||||| | || ||| | ||| | | | | || | |||||||| Sbjct 441 CTCATTAGGGCTCGAAACCGCAGGTGGTGTAATGTCCATTTTAATTCCACGTAATACTAC 500 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 | | ||| ||||||| | | | ||| | || || ||||||||||| | | Sbjct 501 TGTGCCTACTAAAAAAACACAAATCTTTACAACTCATGAAGATAATCAAAAAAGTATGCT 560 Query 552437 AATTCAAATTTTTGAAGGAGAA 552458 || ||| | |||||||||||| Sbjct 561 GATCCAAGTGTTTGAAGGAGAA 582 >seq446 Length=43508 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| ||||| || | ||| ||| ||||| || ||||| || | ||||| | Sbjct 20824 AGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGG--ATGTTGTAGTCCGAGAGAGTGC 20767 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| || ||||| || || || || || | ||||| |||||||||||||||| Sbjct 20766 GGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTT 20707 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAG 563432 | || || || || ||||| || || ||| || || || | || | ||| ||||| Sbjct 20706 CCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGTTCG-ACA-TCGAG 20649 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | |||||||| || || || || || || || ||||| Sbjct 20648 AGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCAT 20607 >seq279 Length=11925 Score = 87.8 bits (96), Expect = 1e-11 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 720751 TCTCGATAATTGTAAAAAGCATAACAATATGATTTTTCTCCATCCCTTCCTGCACGACCA 720810 |||| |||||| |||||| | ||| | | ||| || ||||| ||||| || ||| Sbjct 314 TCTCCATAATTATAAAAAAGAATACATTCGGCTTTGCGCCCGTCCCTCCCTGCTCGTCCA 373 Query 720811 ATTTCTTGATAATATCCTTCAATATTTTTAGGTGCACCATAATGTATAACTGCTCTCACA 720870 ||| |||||||| ||| ||| ||| || | | |||| | || ||| ||| Sbjct 374 GATTCCTGATAATAGCCTATTATAGATTTTGGCATAGAAAAATGAACTACGTATCTTACA 433 Query 720871 TCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCGCAACCATAACTTTA 720921 ||| |||||| || ||||||||||||||||| || ||||| || |||||| Sbjct 434 TCAGGTTTATTAATACCCATTCCAAAAGCAATAGTGGCAACAATCACTTTA 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028966212195640