Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq352 233 2e-56 >seq352 Length=10598 Score = 233 bits (258), Expect = 2e-56 Identities = 497/728 (68%), Gaps = 18/728 (2%) Strand=Plus/Plus Query 36890 ATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCAT 36949 ||| || ||||| ||| |||| ||||| ||||| ||||||| || || ||| | ||| Sbjct 6799 ATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCAT 6858 Query 36950 AAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAGCCT 37009 | ||||||||||| |||||||| | || ||| | | | | ||| | Sbjct 6859 CCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGACG 6918 Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| ||| ||||| ||||||| ||||||| | | | || || ||||| |||| ||| Sbjct 6919 ATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTAC 6978 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | ||||| | |||| |||||| | || || || || || || | | Sbjct 6979 TGGTAAAGCATCACTGACAAATCTCTTTTCT-TGAT--CAACAGCTGATACAATGATCTC 7035 Query 37130 AATAACTTCTTCAGTTGGG--GGATATTTTAAATAT--TTAAACAATAAACATGCAAAAT 37185 |||| | | || || | ||||| || | ||| ||| | ||||||||| | Sbjct 7036 GGTAACA-CGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGT 7094 Query 37186 CACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTA 37245 | || |||||||||||||| | || |||||||| || || || | ||||||||| | Sbjct 7095 CGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCA 7154 Query 37246 AACCTCtttttttAATCCAAAATATTGCTGCAAAA-GATCCAGAAAAGAAAATACCTTCA 37304 |||||| |||||| | |||||| | | |||||||| || ||||| |||||||| ||||| Sbjct 7155 AACCTCGTTTTTTTAACCAAAA-AATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCT 7213 Query 37305 ACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAG-AAATCCAttt 37363 || || || || |||||||| ||| | | |||| | ||| | | | |||||| Sbjct 7214 ACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACG-CGTATTGTTTGTCAGTCCATTG 7272 Query 37364 ttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | ||| | ||||| |||||| || | ||||| ||||| ||||| || Sbjct 7273 AAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAA---CAA 7329 Query 37424 Gt-ttttttCTTCACTATCT--GTTATATAAGTATCAATTAGTAAACTATACATTTCAGA 37480 || ||||||| || ||| || || | || ||||| || | | ||||| ||| || Sbjct 7330 GTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGA 7389 Query 37481 GTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAAC 37540 ||||| ||||||||||| || |||||||||||||| || | ||||||| |||| | Sbjct 7390 ATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCAT 7449 Query 37541 ATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAA 37600 || | | || | | || |||||||| || || || |||||||| || |||||||| Sbjct 7450 GTCTTCCATGAAATTGGTTGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGAA 7509 Query 37601 AGCAAGAA 37608 || |||| Sbjct 7510 CGCGAGAA 7517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592270628905440