Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq83 244 7e-59 seq1818 168 4e-36 seq99 122 6e-22 seq446 109 4e-18 seq287 104 2e-16 >seq83 Length=20893 Score = 244 bits (270), Expect = 7e-59 Identities = 393/554 (71%), Gaps = 12/554 (2%) Strand=Plus/Minus Query 474327 TTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTA 474386 ||||| ||||||| || | || || || || |||||| | ||||||||| |||| | Sbjct 15622 TTGCA-TTGGTATAGACCTTGGGACGACATATTCTTGTGTTGGTGTTTGGCAGAATGATC 15564 Query 474387 AAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTA 474446 | || ||||| ||| | || || ||||| || | || || ||||||||||| |||| | Sbjct 15563 AGGTGGAAATTATTTCAAACGATCAAGGACATCGGACGACTCCATCATATGTAGCTTTCA 15504 Query 474447 CTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 ||| || || | || |||||||| ||||| ||| ||||| ||| | ||||| | Sbjct 15503 ATGATACGGAGCGACTAATTGGAGACGCTGCAAAAAGTCAAGTTGCTTTGAATCCCACAA 15444 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 ||||||||||||| || || | | || || || | |||| ||| || || || Sbjct 15443 ATACTATTTTTGACGCAAAGCGTCTAATCGGGCGAACTTTTACAGATCCCGTGGTACAGA 15384 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG---GTGGTAAACC-ATA--TA 474620 |||| | || ||||| ||||| || | | | | ||| |||||| || | Sbjct 15383 ATGATTTAACACACTGGCCATTTAAAGTATTTAGCGGAGCAGGTGATAAACCGATGATTC 15324 Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 ||| | ||| || ||||||| | ||| ||||| | || |||| |||||||||| Sbjct 15323 TAGTTG-AATGG-CG-AGGTGAAGAGAGACATTTTTCTGCTGAGGAAATATCTTCAATGG 15267 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 | ||| | || |||||| || || || | ||| | || || ||| || |||| Sbjct 15266 TGTTATCAAAGATGAAAACAATTGCTGAAGAC-TATTTGGGTGAATCAGTCTCTAGTGCA 15208 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 ||||||||||||||||| ||||| |||||| ||||||||||| |||| |||||||| || Sbjct 15207 GTAATTACTGTTCCAGCGTATTTCAATGATGCTCAACGTCAATCAACGAAAGATGCTGGC 15148 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 || ||||| || ||| | |||||||| ||||||||||| ||||| || || || | || Sbjct 15147 AGTATTGCTGGACTTCAAGTTTTACGAATTATTAATGAGCCAACTGCTGCTGCTATAGCC 15088 Query 474860 TATGGTCTTGATAA 474873 |||||| | ||||| Sbjct 15087 TATGGTTTGGATAA 15074 >seq1818 Length=990 Score = 168 bits (186), Expect = 4e-36 Identities = 321/461 (70%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 475884 TTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTA 475943 |||| ||||| |||||||| | ||||||||||| | |||||| | ||||||| || | Sbjct 50 TTGATGTAACCCCACTTTCTCTTGGTCTTGAAACCGCTGGAGGTGTCATGACTACCCTCA 109 Query 475944 TTGACAGAAATACTCCTATCCCATGCAAAAAA---TCAAAAGTATTTTCCACTTATTCTG 476000 |||| | || ||| | || ||| ||||| || ||||| | ||||||| || |||| Sbjct 110 TTGAGCGTAACACTACCATTCCA-GCAAAGAAGGATCAAACCT--TTTCCACCTACTCTG 166 Query 476001 ATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATA 476060 |||| ||||| || || ||| | | |||||||||| | | || ||||||| Sbjct 167 ATAACCAAACTGGAGTCTTGATTCAAGTTTATGAAGGTGAACGTTCCATGACCAAAGATA 226 Query 476061 ATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTC 476120 | |||| |||||| | ||| | || || || || || || || | || ||||||| Sbjct 227 ACAACAGACTTGGTAAATTTCAACTCGATGGAATCCCACCAATGCCTCGTGGTGTTCCTC 286 Query 476121 AAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATA 476180 ||||| ||||| | ||||||||||| |||||||||||||| || |||||| || Sbjct 287 AAATTTGCGTTACATACGATATTGATGCTAATGGTATTCTTAACGTAACTGCTAAAGAAG 346 Query 476181 AATCTAGT-AACAAGAGTAAAAATATAACTATTACAAAC-AATCGTGGTAGATTTACTGA 476238 |||| | | |||| || || || |||| |||| |||| |||| | || | | Sbjct 347 TTTCTACTGGAAAAGA-AAACAAGATTCAAATTAAAAACGAATC-TGGTCGCTTGTCCAA 404 Query 476239 AGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCTGATAACAAG-- 476296 ||| ||||| | || |||||| ||||||| || || || ||| ||| | | ||| Sbjct 405 AGATGAAATTGACCGCATGGTTAATGAAGCTGAAAAG-TTCAAG-AGCCAAGATGAAGCT 462 Query 476297 AGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTA 476337 | ||||| | ||| ||| ||||||| | | ||||| || Sbjct 463 CAACAAGCTCGTGTTGTTGCTAAGAATGCATTCGAAAACTA 503 >seq99 Length=19583 Score = 122 bits (134), Expect = 6e-22 Identities = 210/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 356260 AAATTCATTATTAATCCTTTAATATGATATCCATCAACGTCTTGATCTGCTAAAATCATA 356319 ||||| |||| | ||||| || ||| | |||||| |||||||||| || | ||||||| Sbjct 5795 AAATTAATTAAAAGACCTTTGATGTGAGAACCATCATCGTCTTGATCAGCCATAATCATA 5736 Query 356320 ATACTACCATACCTAAGTTCTTTAAGATCA------TTATATACTTTTCCTTGCTCTAAA 356373 | | |||||||| ||| ||| | || | || |||| | | ||||| Sbjct 5735 ACAGAACCATACCGAAGAGATTTCAATCCAACTTGTTCGTAATCTTTATTTCGATCTAAC 5676 Query 356374 CCAACAAttttttttATAGCAGTTATTTCTTCATTACTTGCGACAATTGCTGGACTTTTG 356433 |||| | ||| | || | |||||||| || || | | |||| | || | Sbjct 5675 CCAATCACTTTAATAATTGTTTGGATTTCTTCGTTCTTTTTAATATTTGC-GTACGTAGC 5617 Query 356434 GTT-CTTACATTTAGTGGTTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGAC 356492 | | |||||||| ||||||||||| ||||| || | |||| ||| |||||| || | Sbjct 5616 ATCACGTACATTTAAAGGTTTTCCTTTCAATGGAAATACACCAAAATTATCTCTACCAAT 5557 Query 356493 AACATTTAATCCAGACATAGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGT 356552 || |||||||| || || ||||||||||| |||||||| ||||| | ||||||||| Sbjct 5556 GACTGATAATCCAGCAATCGCTAATGCTTTAGCAGAATCTCCCTCAGTTAAAATTAAAGT 5497 Query 356553 ACA 356555 ||| Sbjct 5496 ACA 5494 Score = 122 bits (134), Expect = 6e-22 Identities = 210/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 356260 AAATTCATTATTAATCCTTTAATATGATATCCATCAACGTCTTGATCTGCTAAAATCATA 356319 ||||| |||| | ||||| || ||| | |||||| |||||||||| || | ||||||| Sbjct 13766 AAATTAATTAAAAGACCTTTGATGTGAGAACCATCATCGTCTTGATCAGCCATAATCATA 13825 Query 356320 ATACTACCATACCTAAGTTCTTTAAGATCA------TTATATACTTTTCCTTGCTCTAAA 356373 | | |||||||| ||| ||| | || | || |||| | | ||||| Sbjct 13826 ACAGAACCATACCGAAGAGATTTCAATCCAACTTGTTCGTAATCTTTATTTCGATCTAAC 13885 Query 356374 CCAACAAttttttttATAGCAGTTATTTCTTCATTACTTGCGACAATTGCTGGACTTTTG 356433 |||| | ||| | || | |||||||| || || | | |||| | || | Sbjct 13886 CCAATCACTTTAATAATTGTTTGGATTTCTTCGTTCTTTTTAATATTTGC-GTACGTAGC 13944 Query 356434 GTT-CTTACATTTAGTGGTTTTCCTTTTAATGGGAAAATACCATAATAATCTCTTCCGAC 356492 | | |||||||| ||||||||||| ||||| || | |||| ||| |||||| || | Sbjct 13945 ATCACGTACATTTAAAGGTTTTCCTTTCAATGGAAATACACCAAAATTATCTCTACCAAT 14004 Query 356493 AACATTTAATCCAGACATAGCAAATGCTTTAGCTGAATCTCCTTCAGTAAGAATTAAAGT 356552 || |||||||| || || ||||||||||| |||||||| ||||| | ||||||||| Sbjct 14005 GACTGATAATCCAGCAATCGCTAATGCTTTAGCAGAATCTCCCTCAGTTAAAATTAAAGT 14064 Query 356553 ACA 356555 ||| Sbjct 14065 ACA 14067 >seq446 Length=43508 Score = 109 bits (120), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| ||| || || || || | ||| Sbjct 20828 ACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATG--TTGTAGTCCGAGAGA 20771 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| || || || ||||| || || ||||| || || |||||||||||| Sbjct 20770 GTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATT 20711 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||||||||| || |||||||| || ||| || ||||| || | || || Sbjct 20710 CCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGTTCGACATCG 20651 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || |||||||| ||||| ||||| || || || || Sbjct 20650 AGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTG 20610 >seq287 Length=11809 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474725 GAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCA 474784 ||||||| |||| || ||||| ||||| ||||||||||| ||| ||||||| | || Sbjct 513 GAAGTAAAGAATGCTGTGATTACAGTTCCTGCATATTTTAACGATAGTCAACGTAATGCT 454 Query 474785 ACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACA 474844 ||||||||||| || | ||||| || |||||||| | | ||||| |||||||| || Sbjct 453 ACTAAAGATGCTGGTCGTATTGCTGGCCTTAATGTCATGAGAATTATCAATGAACCTACT 394 Query 474845 GCAGCCGCACTTGCTTATGG 474864 || || || | || ||||| Sbjct 393 GCTGCAGCTATAGCATATGG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267911707702928