Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq458 212 3e-50 >seq458 Length=35501 Score = 212 bits (234), Expect = 3e-50 Identities = 333/474 (70%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| ||||| | | |||||| ||| | | ||| ||||| |||||||| || Sbjct 30941 ATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAATAAATCAGG 30882 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | | ||||||| | |||||| || | | ||||||||| || ||||||||||| Sbjct 30881 AACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTTTT 30822 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 || | | ||| |||| |||||| | ||||| ||||| | ||| | ||| ||| || Sbjct 30821 CAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCC 30762 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||||| ||||||||| |||||||| ||||| | ||||| ||||| |||||| ||||||| Sbjct 30761 TTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACAT 30702 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA-TCCTGTCGATCTAA 26186 ||| || | ||| ||||| | || || || | | |||| | ||| | || | | || Sbjct 30701 TGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTTAGATCCA-CGAA 30643 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 ||| |||| |||||| || |||||||| | || || || |||||||| | || Sbjct 30642 TATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAA 30583 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 || || ||||||||| || || ||||||| | | |||||| || || | Sbjct 30582 GAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACA 30523 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAAT 26360 ||| | | || || | |||||||| || ||||| ||||| || |||| Sbjct 30522 TTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTAAT 30469 Score = 102 bits (112), Expect = 4e-17 Identities = 85/102 (83%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 25014 TAAATTCTCCAGACAAAACTCTTCTT--ATTGATAAGTTTGAAGTGAATGGTTCAAAACA 25071 ||||||| |||| | |||||| | | || ||| ||||||||| ||||||| ||||| Sbjct 31880 TAAATTCACCAGCAAGAACTCTACGTGAATAAATA--TTTGAAGTGTATGGTTCGAAACA 31823 Query 25072 TTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCAT 25113 |||||||||||| || |||||||||||||| ||||||||||| Sbjct 31822 TTCATTATTTCCCAATATTTGAGAAGTAGAAGCTGTTGGCAT 31781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253020768643700