Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4040 150 2e-31 >seq4040 Length=2647 Score = 150 bits (166), Expect = 2e-31 Identities = 300/433 (69%), Gaps = 10/433 (2%) Strand=Plus/Plus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || ||| |||| | |||| | || |||||||||| ||| || || ||||| ||||| || Sbjct 2201 TAAAAACGGTGCTAAATGTCTCGCAACACCAATAGAACCAACACCTGGACCACCACCACC 2260 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCAC 138276 ||| |||||||| || || ||||||||||||| |||||| |||||||| || ||| | | Sbjct 2261 ATGCGGAATACAAAAAGTTTTATGTAAATTTAAATGACACACATCTGCTCCAATATTTCC 2320 Query 138277 ATGGTTTTGCTAGA-CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCA 138335 | || | || | ||||| || || || | ||| |||||||| | |||||| |||||| Sbjct 2321 A-GGAGAAG-TATACCCTACTTGAGCGTTCATATTAGCACCATCCATATATACTTGACCA 2378 Query 138336 CCATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTC 138395 |||| ||| || | | | ||||| || | ||| ||||| ||| ||| Sbjct 2379 CCATGCGTATGTACAGTATCAATTATCTCAACAATTCCTTCTTCGAATACTCCAAAAGTA 2438 Query 138396 GATGGATATGTAATCAT-AATACA-TGAGAGTTCAAATGTATTCATGATTGCTTTCTTCT 138453 ||||||||||| | ||| | | || ||| | ||| || | |||||| |||| Sbjct 2439 GATGGATATGTGACCATCAGTGCAGCAAGATTATCCTTGTGTT--TTTCTGCTTT-TTCT 2495 Query 138454 CT-AGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATT 138512 | | ||||| || || | | ||| || || ||| | ||| |||||||| Sbjct 2496 TTCAAATCTTCCATATCAACATCACCACTTTCTACAGTCTTAATTGGTACTACTTTCATA 2555 Query 138513 CCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACA 138572 ||||| ||||||| |||||||| |||||||| ||||| ||| || | ||||| | Sbjct 2556 CCTGCTTGGACTGCAGATGCAGGATTGGTTCCATGCGCTGATGTTGGAATTAAACATATA 2615 Query 138573 TTTCTTTTATCAT 138585 || | |||| || Sbjct 2616 TTCCGATTATGAT 2628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578953267074720