Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq458 174 2e-38 seq4407 143 3e-29 seq2023 143 3e-29 seq1166 143 3e-29 seq352 114 2e-20 >seq458 Length=35501 Score = 174 bits (192), Expect = 2e-38 Identities = 706/1098 (64%), Gaps = 17/1098 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 || || ||||||| |||||||||||| |||| ||| | ||| | || || || | ||| Sbjct 30294 CGTGATTATGATTATGGTTACTTTGGATTCAAGACCTTAGAGC-GTGCATACCTACTACG 30352 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | || | | | || || || ||||| ||||||| |||||| | || || Sbjct 30353 TGTAAACGGAGTAATTGTTGAGCGTCCTCAACACATGCTCATGCGTGTCGCAGTTGGTAT 30412 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCC-CAAGGTATGT 75305 ||| ||| | ||| || ||||| || || || | |||||| | | || | Sbjct 30413 ACACAAGGATAATATTCCAAAAGTTTTGGAAACGTATGAAATGATGTCAACTAAACAT-T 30471 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTT 75365 || || |||||||||||||| || ||||||||||| | | | || || ||||| | Sbjct 30472 ACACACATGCAACACCAACCCTATTTAATGCTGGTACTCGACGCCCTCAAATGTCATCCT 30531 Query 75366 GCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGT 75425 | || || || | | || || ||||| || | || || |||| ||||||| | | Sbjct 30532 GTTTTCTCATGACTATGAAAGAAGACTCTATTGAAGGAATTTATGACACTCTTAAAAATT 30591 Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 |||| ||||| |||| ||||| |||||||| || || || || | | | Sbjct 30592 GTGCATGCATCTCGAAGTATGCTGGTGGTATTGGTATTTCAATTCACAATATTCGTGGAT 30651 Query 75486 ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 ||| || |||||| || || |||||| ||| ||||| || | |||||| | | | Sbjct 30652 CTAACTCCTATATTCGTGGAACCAATGGTTCTTCAAATGGTCTTGTACCAATGTTGAGAG 30711 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG---TCGCAAGGGGTCCATCG 75602 | ||||| | || || || || || |||||| ||| | || || || || ||| Sbjct 30712 TTTTTAATGATACTGCTCGTTACGTTGATCAAGGGGGAGGAAAACGAAAAGGATCTTTCG 30771 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACC 75662 | || || | ||||| |||||| ||||| | || |||||| | | | || | Sbjct 30772 CTGTTTATCTCGAACCTTGGCATTGTGATATTCTTGAATTCCTTCAACTGAAAAAGAATC 30831 Query 75663 AAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTT 75722 | ||| | ||||| || || ||||||||||||| || ||| |||| || | | Sbjct 30832 ATGGTAAAGAAGAAGCGCGTGCAAGAGATCTCTTTTATGGACTTTGGGTTCCTGATTTAT 30891 Query 75723 TCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGA-CAAGGCACCA 75781 ||||| | || ||| | || | | ||| ||| ||||| ||| | || || ||| Sbjct 30892 TCATGGAACGCGTTCAAAAGAATCAAGATTGGAGTCTCTTCTGCCCAAATGAATGC-CCA 30950 Query 75782 GGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA 75840 |||||| | || | | | || || |||| ||| || || || || || ||| | Sbjct 30951 GGTCTCGCTGATTGTCATTCG-GAAGAATTTGTAGCTCTTTATACTAAATACGAAAACTC 31009 Query 75841 GGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACA 75900 || | ||| | | || | ||| | ||||| || | | || || Sbjct 31010 AGGCAAAGCTCGTACAACGATGAAAGCTCAAAAACTTTGGTTTCAAATATTGGAGTCTCA 31069 Query 75901 GACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCA 75960 || || || ||||| || |||||| || ||| ||||||||||| | || |||||| Sbjct 31070 GATCGAAACCGGAACTCCCTATATGTGTTTCAAAGATGCTTGTAATAGCAAATCTAACCA 31129 Query 75961 AAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGA 76020 ||| ||| | ||||| ||||| ||||||||||| || || ||| | || || || Sbjct 31130 AAAAAATCTTGGAACTATCAAATCGTCAAATCTTTGTACTGAGATTATGGAATATACTTC 31189 Query 76021 TAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA 76080 ||||| | ||||| || ||| | || || ||| ||| | |||| ||| ||| Sbjct 31190 ACCAGATGAAATTGCTGTCTGTAATCTTGCGTCTATCAATCTTTCCAAGTTTGTTGATGC 31249 Query 76081 AGAGACTCGCACTTTTGATTATGAAAAACT--TCATGAAATCACAAAGATTGT-TACCAA 76137 | | ||| || | ||| | ||| ||||| ||| | || ||| ||| | | | Sbjct 31250 TAAAAATCGAACATATGACTTTGAGAAACTCGTCAAGGTGTCTGAAA---TGTGTGCATA 31306 Query 76138 AAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAA 76197 ||| |||| | ||||||||| || | ||||| ||||| || || || || || Sbjct 31307 TAATTTAAATCAAGTCATTGATTTGAACTACTATCCAGTTGAAGAAGCTCGTAATTCAAA 31366 Query 76198 TATGCGACACAGACCTAT 76215 ||||| || |||| || Sbjct 31367 CATGCGTCATCGACCAAT 31384 >seq4407 Length=2415 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 5794 TACCTTCAAAGAGTGCGACACCCACA-GTTGCACCGACTTGACAATGTGTTGTGGAGAGT 5852 |||||||| | || ||||| ||| || ||||| ||||| ||||||||||| || ||| Sbjct 1514 TACCTTCACACCAGGCTACACC-ACACGTAGCACCTACTTGGCAATGTGTTGTCGAAAGT 1456 Query 5853 GGCCACCCGAGGCGAGAGCCAAGAATGATGACAGCGGCCGCGCCAAGTTCAATACAGATA 5912 || ||||| | | || | |||||| ||||| | || || | ||||||| | | Sbjct 1455 GGAATTCCGAGTCTTGTACCCATAATGATTACAGCAACGGCACCTAATTCAATAGAAAAT 1396 Query 5913 CCACGACTCGGTGTAAGTTTTGCCATTTTTGTACCAAGAGCCTCAAGAATCTTATAGCCA 5972 || | || || ||| |||||| |||||||||| | || | |||||| || ||| Sbjct 1395 CCTCTTGAAGGAGTGCATTTCACCATTTGTGTACCAAGAACTTCCATAATCTTGTAACCA 1336 Query 5973 TATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGAGAGAATCCAATATGCGTCG 6032 || | || | || | || || ||| |||| ||||| | ||||||||||||||||| Sbjct 1335 TAAATAGCTAACCCAATTACAATCCCAACAGCACCGAGAGCAAGAATCCAATATGCGTCA 1276 Query 6033 TTACCCATTTCAGCATTCTTGGAGACCGTACCGGATTTATAGATGGCGTAAATGGCGGCA 6092 | || | |||| ||||| || ||| || | ||||| | | ||||| || ||| Sbjct 1275 TCTCCAAGTTCATTTTTCTTAGAAACCTCTCCTGCATTATAAACCACATAAATTGCAGCA 1216 Query 6093 AATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGTGCGAACGAATCACAACA 6148 || || || || || || ||||| ||||| ||||| || | || ||| ||||| Sbjct 1215 AACGGACCAATAGAGTTAGCAACGTCATTTGCACCATGAGAAAAACTATCGCAACA 1160 >seq2023 Length=5341 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 5794 TACCTTCAAAGAGTGCGACACCCACA-GTTGCACCGACTTGACAATGTGTTGTGGAGAGT 5852 |||||||| | || ||||| ||| || ||||| ||||| ||||||||||| || ||| Sbjct 1514 TACCTTCACACCAGGCTACACC-ACACGTAGCACCTACTTGGCAATGTGTTGTCGAAAGT 1456 Query 5853 GGCCACCCGAGGCGAGAGCCAAGAATGATGACAGCGGCCGCGCCAAGTTCAATACAGATA 5912 || ||||| | | || | |||||| ||||| | || || | ||||||| | | Sbjct 1455 GGAATTCCGAGTCTTGTACCCATAATGATTACAGCAACGGCACCTAATTCAATAGAAAAT 1396 Query 5913 CCACGACTCGGTGTAAGTTTTGCCATTTTTGTACCAAGAGCCTCAAGAATCTTATAGCCA 5972 || | || || ||| |||||| |||||||||| | || | |||||| || ||| Sbjct 1395 CCTCTTGAAGGAGTGCATTTCACCATTTGTGTACCAAGAACTTCCATAATCTTGTAACCA 1336 Query 5973 TATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGAGAGAATCCAATATGCGTCG 6032 || | || | || | || || ||| |||| ||||| | ||||||||||||||||| Sbjct 1335 TAAATAGCTAACCCAATTACAATCCCAACAGCACCGAGAGCAAGAATCCAATATGCGTCA 1276 Query 6033 TTACCCATTTCAGCATTCTTGGAGACCGTACCGGATTTATAGATGGCGTAAATGGCGGCA 6092 | || | |||| ||||| || ||| || | ||||| | | ||||| || ||| Sbjct 1275 TCTCCAAGTTCATTTTTCTTAGAAACCTCTCCTGCATTATAAACCACATAAATTGCAGCA 1216 Query 6093 AATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGTGCGAACGAATCACAACA 6148 || || || || || || ||||| ||||| ||||| || | || ||| ||||| Sbjct 1215 AACGGACCAATAGAGTTAGCAACGTCATTTGCACCATGAGAAAAACTATCGCAACA 1160 >seq1166 Length=8465 Score = 143 bits (158), Expect = 3e-29 Identities = 247/356 (69%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 5794 TACCTTCAAAGAGTGCGACACCCACA-GTTGCACCGACTTGACAATGTGTTGTGGAGAGT 5852 |||||||| | || ||||| ||| || ||||| ||||| ||||||||||| || ||| Sbjct 1514 TACCTTCACACCAGGCTACACC-ACACGTAGCACCTACTTGGCAATGTGTTGTCGAAAGT 1456 Query 5853 GGCCACCCGAGGCGAGAGCCAAGAATGATGACAGCGGCCGCGCCAAGTTCAATACAGATA 5912 || ||||| | | || | |||||| ||||| | || || | ||||||| | | Sbjct 1455 GGAATTCCGAGTCTTGTACCCATAATGATTACAGCAACGGCACCTAATTCAATAGAAAAT 1396 Query 5913 CCACGACTCGGTGTAAGTTTTGCCATTTTTGTACCAAGAGCCTCAAGAATCTTATAGCCA 5972 || | || || ||| |||||| |||||||||| | || | |||||| || ||| Sbjct 1395 CCTCTTGAAGGAGTGCATTTCACCATTTGTGTACCAAGAACTTCCATAATCTTGTAACCA 1336 Query 5973 TATGTCGCGAGACCCACAACTATTCCACCAGCTCCGAGGGAGAGAATCCAATATGCGTCG 6032 || | || | || | || || ||| |||| ||||| | ||||||||||||||||| Sbjct 1335 TAAATAGCTAACCCAATTACAATCCCAACAGCACCGAGAGCAAGAATCCAATATGCGTCA 1276 Query 6033 TTACCCATTTCAGCATTCTTGGAGACCGTACCGGATTTATAGATGGCGTAAATGGCGGCA 6092 | || | |||| ||||| || ||| || | ||||| | | ||||| || ||| Sbjct 1275 TCTCCAAGTTCATTTTTCTTAGAAACCTCTCCTGCATTATAAACCACATAAATTGCAGCA 1216 Query 6093 AATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGTGCGAACGAATCACAACA 6148 || || || || || || ||||| ||||| ||||| || | || ||| ||||| Sbjct 1215 AACGGACCAATAGAGTTAGCAACGTCATTTGCACCATGAGAAAAACTATCGCAACA 1160 >seq352 Length=10598 Score = 114 bits (126), Expect = 2e-20 Identities = 292/437 (67%), Gaps = 8/437 (2%) Strand=Plus/Minus Query 64796 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATT 64855 |||| || || |||||||||| ||||||||||| || || | | ||||| Sbjct 7520 ACATTCTCGCGTTCTTTGCTGCAAGTGATGGAATTGTAAACGAAAACTTGGCAACCAATT 7461 Query 64856 TTGCGGATGAAGTGCAGATAAGC-GAAGCGCGCTCATTCTACGCATATCAA--TGCCATA 64912 | ||| || |||| || || |||||||| | || || | | |||| ||| || Sbjct 7460 TCATGGAAGACATGCA-ATGTGCTGAAGCGCGATGCTTTTATGGTTTTCAAATTGC--TA 7404 Query 64913 ATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGAT 64972 ||||| ||||| ||| ||||| | ||||||| | |||| || | Sbjct 7403 TTGAAAACATTCATTCGGAAGTGTATTCTCTTCTTATTGACACGTTAATTACTGAGAAAG 7344 Query 64973 CTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGA 65032 | || || || || || || | || ||| ||||||| || || || | ||||||| Sbjct 7343 CCGAGAAAAATCACTTGTTAAACGCAATCGAAACTGTCCCTTGCGTTAAAGAGAAGGCTG 7284 Query 65033 AATGGGCAATGAAATGGTTTGACACA-AAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCG 65091 |||||| | ||||| ||||| | || | || || || || || || ||| | ||| Sbjct 7283 CATGGGCTCTTCAATGGACTGACAAACAATACGCG-TCTTTTGCTGAACGACTTGTAGCG 7225 Query 65092 TTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAG 65151 || || ||| || || || |||||||| || ||||| ||| ||||| |||||| || Sbjct 7224 TTCGCTGCTGTAGAAGGAATTTTCTTCTCTGGTTCATTTTGCAGTATTTTTTGGTTAAAA 7165 Query 65152 AAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGT 65211 || || ||| | |||||||| || ||||| |||||| | ||||| || ||||| ||| Sbjct 7164 AAACGAGGTTTGATGCCAGGACTCACTTTCTCGAATGAATTAATTTCACGCGATGAAGGT 7105 Query 65212 CTCCACCAGGAGTTTGC 65228 | ||| || ||||| Sbjct 7104 TTACACTGCGACTTTGC 7088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596523097399680