Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq83 264 1e-65 seq458 181 1e-40 seq446 170 3e-37 seq287 163 4e-35 seq1818 159 5e-34 >seq83 Length=20893 Score = 264 bits (292), Expect = 1e-65 Identities = 481/696 (69%), Gaps = 15/696 (2%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 |||||||| || | || || || || || ||||||||||| ||||| ||||||| || Sbjct 15618 ATTGGTATAGACCTTGGGACGACATATTCTTGTGTTGGTGTTTGGCAGAATGATCAGGTG 15559 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 || ||||| | || || |||||| | || || |||||||| || || || || | ||| Sbjct 15558 GAAATTATTTCAAACGATCAAGGACATCGGACGACTCCATCATATGTAGCTTTCAATGAT 15499 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || || || ||||||| || ||||||| ||| ||| |||| || | |||||| Sbjct 15498 ACGGAGCGACTAATTGGAGACGCTGCAAAAAGTCAAGTTGCTTTGAATCCCACAAATACT 15439 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 | |||||||| |||||||| || || || | ||| | ||| || || | ||| Sbjct 15438 ATTTTTGACGCAAAGCGTCTAATCGGGCGAACTTTTACAGATCCCGTGGTACAGAATGAT 15379 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTT 195601 ||| ||||| | | | |||| || ||| | | |||||| || |||||| ||| Sbjct 15378 TTAACACACTGGCCATTTAAAGTATTTAGCGGAGCAGGTGATAAACCGATGATTCTAGTT 15319 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 |||| | ||||| ||| ||| ||| || | || ||||| || || |||||||| Sbjct 15318 GAATGGCGAGGTGAAGAGAGACATTTTTCTGCTGAGGAAATATCTTCAATGGTGTTATCA 15259 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||| | ||| ||| | ||||| || | || |||||| | ||| Sbjct 15258 AAGATGAAAACAATTGCTGAAGACTATTTGGGTGAATCAGTCTCTAGTGCAGTAATTACT 15199 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || || |||| |||| | ||||| || | || || || |||| |||||| Sbjct 15198 GTTCCAGCGTATTTCAATGATGCTCAACGTCAATCAACGAAAGATGCTGGCAGTATTGCT 15139 Query 195782 GGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || | || ||| ||||||| ||||| ||||| || ||||| || || |||||| | Sbjct 15138 GGACTTCA-AGTTTTACGAATTATTAATGAGCCAACTGCTGCTGCTATAGCCTATGGTTT 15080 Query 195841 GGACAAGAACAAGGACGAAGATAAAAAT----GTAT--TGATCTTTGATCTCGGTGGTGG 195894 ||| | ||||| |||| | | | | || | || || ||| | ||||| || Sbjct 15079 GGATA--AACAA-ACCGAATCTGGAGTTCGCCGCATTCTCATATTCGATTTGGGTGGAGG 15023 Query 195895 TACGTTTGATGTCTCACTTCT--CAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACT 195952 || |||||||| || ||||| ||||| || ||||| || || ||||| ||||| Sbjct 15022 CACCTTTGATGTGTCTCTTCTTGCAATA--GAGGGTGGGATTTTTGAAGTTCTTGCTACC 14965 Query 195953 GCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 |||||| |||||||| |||| || |||||||| ||| Sbjct 14964 GCTGGTAATACTCATTTAGGAGGAGAAGATTTTGAT 14929 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 196281 ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTA 196340 ||||| | || ||||| || || ||| | || ||||| | | | || | | ||| | | Sbjct 14427 ATGAAGTGGTACTTGTAGGTGGTTCATCTCGGATTCCAATGGTGCAGAATCTTCTT-CAA 14369 Query 196341 GCTTCTT-CAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTAT 196399 | || || |||| ||| | | || | |||| || | |||||||| ||||| ||| Sbjct 14368 GATTATTTCAATGGTAAGAAACTGAATCAGTCGATTAATCAAGATGAAGCTGTTGCATAT 14309 Query 196400 GGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTT 196459 || || || ||||| |||||||| ||| |||||| | | || | | ||| Sbjct 14308 GGAGCTGCTGTTCAAGCTGCTATACTCGATGGTGTTACCTCTTCCAAAACAGAGAAACTT 14249 Query 196460 CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 | ||| | ||||| || || ||||| | ||| || |||| || |||||||||||||| Sbjct 14248 TTACTATTAGATGTGGCTCCTTTATCCGTCGGTGTTCAAACGGCTGGTGGTGTTATGACC 14189 Query 196520 AAAATTATTGATAGGAACACAACTATTCC 196548 ||||||||| | | || || ||| |||| Sbjct 14188 AAAATTATTCTTCGAAATACGACTCTTCC 14160 >seq458 Length=35501 Score = 181 bits (200), Expect = 1e-40 Identities = 581/882 (66%), Gaps = 27/882 (3%) Strand=Plus/Plus Query 77951 CCTCAATACTTATTCATGCGTGTTTCTATTGGTATTCATGGAAATGATATTCCAGCGGTA 78010 |||||| || | |||||||||| | ||||||| || || |||||||| || Sbjct 30378 CCTCAACACATGCTCATGCGTGTCGCAGTTGGTATACACAAGGATAATATTCCAAAAGTT 30437 Query 78011 CTTGAAACGTATGATAAAATGTCCAATGGTATGTTTATTCAC--GCAACACCTACTTTGT 78068 | ||||||||||| | ||||| | | | ||| ||| |||||||| || | | Sbjct 30438 TTGGAAACGTATGAAATGATGTCAACTA--AACATTACACACATGCAACACCAACCCTAT 30495 Query 78069 TTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGAGG 78128 ||||||| ||||||| || || || |||||||| ||||| || | | | || || | Sbjct 30496 TTAATGCTGGTACTCGACGCCCTCAAATGTCATCCTGTTTTCTCATGACTATGAAAGAAG 30555 Query 78129 ACTCTATTAATGGTATATACGGGACTCTCACAGAGTGTGCTCAGATTTCTAAGTGGGCTG 78188 |||||||| | || || || | ||||| | | | ||||| || || |||| |||| Sbjct 30556 ACTCTATTGAAGGAATTTATGACACTCTTAAAAATTGTGCATGCATCTCGAAGTATGCTG 30615 Query 78189 GTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAAGTCCAGGATTAGAGGAACTA 78248 ||||||| ||| || |||||| || |||||| | || ||| ||| | ||||| | Sbjct 30616 GTGGTATTGGTATTTCAATTCACAATATTCGTGGATCTAACTCCTATATTCGTGGAACCA 30675 Query 78249 ATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATG 78308 ||||| || |||| || | || ||| | || || || |||| ||| || || || | Sbjct 30676 ATGGTTCTTCAAATGGTCTTGTACCAATGTTGAGAGTTTTTAATGATACTGCTCGTTACG 30735 Query 78309 TCAACCAAGCGGGTCGTA---GGAAGGGGTCATTCGCTATGTACCTTGAACCTTGGCACG 78365 | | |||| ||| | | | || || || |||||| | || || ||||||||||| Sbjct 30736 TTGATCAAGGGGGAGGAAAACGAAAAGGATCTTTCGCTGTTTATCTCGAACCTTGGCATT 30795 Query 78366 CCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACGAGGAAGCTCGATGC- 78424 ||| | | || || | |||| || || ||| | || ||||| || ||| Sbjct 30796 GTGATATTCTTGAATTCCTTCAACTGAAAAAGAATCATGGTAAAGAAGAAGCGCG-TGCA 30854 Query 78425 AGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGGAAGGA 78484 || ||| | || || | ||| |||| ||| | || ||| | | ||| | ||| | Sbjct 30855 AGAGATCTCTTTTATGGACTTTGGGTTCCTGATTTATTCATGGAACGCGTTCA-AAAGAA 30913 Query 78485 GGTA-AATGGTCTCTTTTCTGTCCAGAT-AAGACTAAGGGTCTTTCAGA-TGT-ATACGG 78540 | | ||| ||| ||||| ||| || || | | ||||| | || ||| || | Sbjct 30914 TCAAGATTGGAGTCTCTTCTGCCCAAATGAATGCCCA-GGTCTCGCTGATTGTCATTC-- 30970 Query 78541 GGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACAAT 78600 ||||||||| | | | || |||||||||||| | ||| ||| || || || Sbjct 30971 GGAAGAATTTGTAGCTCTTTATACTAAATACGAAAACTCAGGCAAAGCTCGTACAACGAT 31030 Query 78601 TGATGCATCTGAACTATGG----AAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCC 78656 | || |||| ||| ||| ||| | | ||| | || ||||| || | Sbjct 31031 GAAAGCTCAAAAACTTTGGTTTCAAA--TAT--TGGAGTCTCAGATCGAAACCGGAACTC 31086 Query 78657 CGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCA 78716 | |||||| | |||||| ||||| || || ||||||||||| || || || | Sbjct 31087 CCTATATGTGTTTCAAAGATGCTTGTAATAGCAAATCTAACCAAAAAAATCTTGGAACTA 31146 Query 78717 TCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACAC-GGATAAGAATGAAACAGCT 78775 ||||| || || ||||| || || ||| ||||||| || | || |||||| ||| Sbjct 31147 TCAAATCGTCAAATCTTTGTACTGAGATTATGGAATATACTTCACCAG-ATGAAATTGCT 31205 Query 78776 GTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGAT 78817 || |||||||| | ||||||| ||| | |||||||||||| Sbjct 31206 GTCTGTAATCTTGCGTCTATCAATCTTTCCAAGTTTGTTGAT 31247 >seq446 Length=43508 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || ||||| || || ||||| ||||| ||||| || || | || Sbjct 20607 ATGCAGATATTTGTCAAGACCCTCACAGGTAAAACCATCACTCTCGATGTCGAACCTTCC 20666 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || ||||| || || |||||||| ||||| || || ||| Sbjct 20667 GACACTATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 20726 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || |||||||||||||| |||||||| || || ||| | || |||||| Sbjct 20727 CAGCGTCTCATCTTCGCTGGTAAACAGCTCGAAGATGGCCGCACTCTCTCGGACTACAAC 20786 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | ||||||||||| || | ||||||||||| | ||||| ||||| Sbjct 20787 ATCCAAAAGGAGTCCACCTTGCACCTTGTTCTCCGCCTTCGTGGTGG 20833 >seq287 Length=11809 Score = 163 bits (180), Expect = 4e-35 Identities = 217/294 (74%), Gaps = 17/294 (6%) Strand=Plus/Minus Query 195704 AAAGA-TGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAA 195762 ||||| ||| || | || || ||||| || || | ||| ||||| | || || || Sbjct 508 AAAGAATGCTGTGATTACAGTTCCTGCATATTTTAACGATAGTCAACGTAATGCTACTAA 449 Query 195763 GGACGCTGCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGG 195821 || |||| | |||||| || || || |||| | ||||||||||||||||| || || | Sbjct 448 AGATGCTGGTCGTATTGCTGGCCTTAA-TGTCATGAGAATTATCAATGAACCTACTGCTG 390 Query 195822 CTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAA-GATAA---AAA---TGTATTG 195874 | || || || ||||| || ||| | ||| | |||| | | |||||| Sbjct 389 CAGCTATAGCATATGG------CATGAA-AGGGAGTAGCGATACCCCACAGTCTGTATTA 337 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 || |||||||| ||||||||||| |||||||| || |||||| | ||||||| |||||| Sbjct 336 ATATTTGATCTTGGTGGTGGTACATTTGATGTATCCCTTCTCCAAATTGAAGATGGTATT 277 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || |||||| || |||||||||||||||||||| || || |||||||||||| Sbjct 276 TTTGAAGTACGTGCAACTGCTGGTGATACTCATCTTGGAGGGGAAGATTTCGAT 223 >seq1818 Length=990 Score = 159 bits (176), Expect = 5e-34 Identities = 283/410 (69%), Gaps = 2/410 (0%) Strand=Plus/Plus Query 196454 GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTT 196513 ||| | || || |||||||| | || | || || ||||||||||| || || ||||| Sbjct 37 GATTTACTTCTCCTTGATGTAACCCCACTTTCTCTTGGTCTTGAAACCGCTGGAGGTGTC 96 Query 196514 ATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCA 196573 ||||||| | ||||| | ||||| || ||||| | |||||||| ||| |||||| Sbjct 97 ATGACTACCCTCATTGAGCGTAACACTACCATTCCAGCAAAGAAGGATCAAACCTTTTCC 156 Query 196574 ACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGT 196633 || || || ||||| ||| | || || |||||||| |||||||| ||||| ||| Sbjct 157 ACCTACTCTGATAACCAAACTGGAGTCTTGATTCAAGTTTATGAAGGTGAACGTTCCATG 216 Query 196634 GCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAG 196692 | || |||||| | |||||| || |||| | | || || || ||| | || | Sbjct 217 ACCAAAGATAACAACAGACTTGGTAAATTTCAACTCGA-TGGAATCCCACCAATGCCTCG 275 Query 196693 AGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCAC 196752 |||||||| || ||| ||| | |||||| || || ||||| ||||| ||||| || Sbjct 276 TGGTGTTCCTCAAATTTGCGTTACATACGATATTGATGCTAATGGTATTCTTAACGTAAC 335 Query 196753 AGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCG 196812 ||| | || || |||| ||| | |||||| |||| || || || || Sbjct 336 TGCTAAAGAAGTTTCTACTGGAAAAGAAAACAAGATTCAAATTAAAAACGAATCTGGTCG 395 Query 196813 GCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACA 196862 | || || || |||||||| || |||||| | || || ||||||| || Sbjct 396 CTTGTCCAAAGATGAAATTGACCGCATGGTTAATGAAGCTGAAAAGTTCA 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657811119625920