Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq352 154 2e-32 >seq352 Length=10598 Score = 154 bits (170), Expect = 2e-32 Identities = 433/651 (67%), Gaps = 21/651 (3%) Strand=Plus/Plus Query 17884 TTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATT 17943 ||| || || || ||||| ||||||| || || || | |||||| | ||||||||||| Sbjct 6814 TTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATCCATTCAAATGGATT 6873 Query 17944 AGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA-AATT 18002 | || |||||| ||| || | | ||| | | | ||| || ||| |||| Sbjct 6874 TTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGACGATCAGC-ACAGAATT 6932 Query 18003 CGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAA 18062 | | ||||| |||| || ||||||| || | ||| | |||| ||||||| Sbjct 6933 CAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTACTGGTAAAGCATCAC 6992 Query 18063 TAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTT 18121 | | |||| ||||| ||| ||||||| | || || | | || | ||||||| Sbjct 6993 TGACAAATCTCTTT-TCTTGATCAACAGCTGATACAATGATCTCGGTAACACGAGATTTT 7051 Query 18122 GGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCT 18181 || | |||||| | | || ||||| | | ||| ||||| || |||||||||| Sbjct 7052 GGAAGTTTATTTACAAGCTGGTTATAC---ACGAGACATGCAAAGTCGCAGTGTAAACCT 7108 Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 ||||| | || |||||||| || || || | || ||||| | ||||| ||||||| Sbjct 7109 TCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCAAACCTCGTTTTTTT 7168 Query 18242 AGCCAAAATATCGATGCGAAA-CTACTAGAAAAGAATATACCCTCAAC-GCACGCGAACG 18299 | |||||| || ||| ||| || ||| ||||| || || || || ||| ||||||| Sbjct 7169 AACCAAAAAAT-ACTGCAAAATGAACCAGAGAAGAAAATTCCTTCTACAGCA-GCGAACG 7226 Query 18300 CTATTAATCTTTCAGCAAAA---CTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATT 18356 ||| | || |||||||||| ||||| ||| |||| |||||| | |||||| Sbjct 7227 CTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTG-TCAG--TCCATTGAAGAGCCCATG 7283 Query 18357 CTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTT 18416 | | | | || || | | | || || || || ||||| | | ||||||| Sbjct 7284 CAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAAGTGA--TTTTTCTC 7341 Query 18417 TGGAATCT--TTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTC 18474 | ||| | || | ||||| || | | |||||||| ||| ||||| ||| |||| Sbjct 7342 GGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGAATGAATGTTTTC 7401 Query 18475 CATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC 18525 ||||| || ||||||| |||||| ||| || || | | |||| || || Sbjct 7402 AATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCATGTC 7452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731814950577600