Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq352 118 2e-21 seq446 105 1e-17 >seq352 Length=10598 Score = 118 bits (130), Expect = 2e-21 Identities = 274/401 (68%), Gaps = 13/401 (3%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| || || | |||||| | |||||||||||||| ||||||||| ||| || | Sbjct 6837 CTTGTAAAGAAATAAGATTCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCAC 6896 Query 49633 CTATCAATACATATA-ATAA-TCTATCGGCTACA-AATTCAACATATTGTGACATTAATT 49689 | | | | || |||| | ||| || ||| ||||||| ||||| |||||||| Sbjct 6897 --ACCCAAGCTGGTAGATAAGACGATCAGC-ACAGAATTCAATGTATTGGCACATTAATG 6953 Query 49690 CACAATTCATACCCAATAA-TTTAAATGGTAATGCATCATCAATAAATTCtttttctatt 49748 | ||||||| ||||||| || | |||||| |||||| | |||| |||||| Sbjct 6954 TAGAATTCAT-TCCAATAAGTTCTACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGA 7012 Query 49749 tctacagcttgtttaattatcataattatattattttttgataatttatatttaatatga 49808 || |||||| | ||| ||| | | | | ||||| | ||||| | || || Sbjct 7013 TCAACAGCTGATACAATGATCTCGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGG 7072 Query 49809 ttcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 || ||| | | ||||||||| || |||||||| || || | || || |||||| Sbjct 7073 TT---ATACACGAGACATGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCA 7129 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || ||||| | ||||||||| || |||| ||||| | |||||| | | ||||||| Sbjct 7130 TTCGAGAAAGTGAGTCCTGGCATCAAACCTCGTTTTTTTAACCAAAA-AATACTGCAAAA 7188 Query 49929 -CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTA 49968 || ||| ||||| || || || ||| || || |||| Sbjct 7189 TGAACCAGAGAAGAAAATTCCTTCTACAGCAGCGAACGCTA 7229 >seq446 Length=43508 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||| ||||| | ||| || | || | || || || | ||| || ||| || || Sbjct 20839 ATAACTCCACCACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTAG 20780 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | || || |||| || | ||||||||||| ||||| | | ||| || ||| Sbjct 20779 TCCGAGAGAGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCA 20720 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| || || || || || | || ||||| |||| || || | | Sbjct 20719 GGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGGT 20660 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||||||||| || | || || | ||||||||||||||| Sbjct 20659 TCGACATCGAGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCATTTT 20604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984401341278600