Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq352 159 6e-34 seq446 98.7 2e-15 >seq352 Length=10598 Score = 159 bits (176), Expect = 6e-34 Identities = 297/424 (70%), Gaps = 13/424 (3%) Strand=Plus/Plus Query 38852 TTTTTCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATT 38911 |||||| ||||||||||||||||||| ||| || || | |||||| | ||||||||||| Sbjct 6814 TTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATCCATTCAAATGGATT 6873 Query 38912 TTTGGTATTATAATATTTTTCTCCTATCAATACATATA-ATAA-TCTATCGGCCACA-AA 38968 ||| ||||||||| ||| || | | | | | || |||| | ||| | |||| || Sbjct 6874 TTTCGTATTATAAACTTTATCAC--ACCCAAGCTGGTAGATAAGACGATCAG-CACAGAA 6930 Query 38969 TTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA-TTTAAATGGTAATGCAT 39027 ||||| ||||| |||||||| | ||||||| ||||||| || | |||||| |||| Sbjct 6931 TTCAATGTATTGGCACATTAATGTAGAATTCAT-TCCAATAAGTTCTACTGGTAAAGCAT 6989 Query 39028 CATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatattatttt 39087 || | |||| |||||| || |||||| | ||| ||| | | | | || Sbjct 6990 CACTGACAAATCTCTTTTCTTGATCAACAGCTGATACAATGATCTCGGTAACACGAGATT 7049 Query 39088 ttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAAC 39147 ||| | ||||| | || || || ||| | | ||||||||| || ||||||| Sbjct 7050 TTGGAAGTTTATTTACAAGCTGGTT---ATACACGAGACATGCAAAGTCGCAGTGTAAAC 7106 Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 |||| || | || || |||||||| ||||| | ||||||||| || |||| |||| Sbjct 7107 CTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCAAACCTCGTTTTT 7166 Query 39208 TAAGCCAAAATATTGATGCAAAA-CTACTAGAAAAGAATATACCCTCCACACACGCAAAT 39266 | | |||||| | | ||||||| || ||| ||||| || || || ||| || || Sbjct 7167 TTAACCAAAA-AATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCTACAGCAGCGAAC 7225 Query 39267 GCTA 39270 |||| Sbjct 7226 GCTA 7229 >seq446 Length=43508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171836 CATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 ||||| ||||| | ||| || | || | || || || | ||| || || || || Sbjct 20840 CATAACTCCACCACGAAGGCGGAGAACAAGGTGCAAGGTGGACTCCTTTTGGATGTTGTA 20781 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 || || | || || | || || | ||||||||||| || || | | ||| ||||| Sbjct 20780 GTCCGAGAGAGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTC 20721 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||| || |||||||| || || || || || | || ||||| ||||| || || | Sbjct 20720 AGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATAGTGTCGGAAGG 20661 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || || ||||| ||||||||||| || | || || | |||||||||||||| Sbjct 20660 TTCGACATCGAGAGTGATGGTTTTACCTGTGAGGGTCTTGACAAATATCTGCATTTT 20604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905065444648800