Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq458 221 4e-52 seq99 111 5e-19 seq538 86.0 2e-11 >seq458 Length=35501 Score = 221 bits (244), Expect = 4e-52 Identities = 651/993 (66%), Gaps = 24/993 (2%) Strand=Plus/Minus Query 155540 TTTCACATAGTCAAATGTTTTATCCT---CATTTACAAACATACCAAGACCAATAGACGC 155596 |||| || ||||| ||||| || | ||| |||||| | |||| |||||||| Sbjct 31277 TTTCTCAAAGTCATATGTTCGATTTTTAGCATCAACAAACTTGGAAAGATTGATAGACGC 31218 Query 155597 CAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGT 155655 |||||||| || ||| | || | || | | | ||||| | ||||||| || || | Sbjct 31217 AAGATTACAGACAGCAATTTCATCTGGTGAAG-TATATTCCATAATCTCAGTACAAAGAT 31159 Query 155656 TAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGT 155715 | || ||||| || || | ||| || ||||||||||| || ||||||||||| ||| Sbjct 31158 TTGACGATTTGATAGTTCCAAGATTTTTTTGGTTAGATTTGCTATTACAAGCATCTTTGA 31099 Query 155716 ATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCAC 155775 | || || || ||||| || || ||||| | |||| || | | ||| || | Sbjct 31098 AACACATATAGGGAGTTCCGGTTTCGATCTGAGACTCCAATATTTGAAACCAAAGTTTTT 31039 Query 155776 GGGCATTAATTTGCTTGTTGTATCTGCCTTCC--GACT---CATATTTCATATACAGCGT 155830 | || || || |||||| || || | || | | ||||| |||| || | Sbjct 31038 GAGCTTTCATC-----GTTGTACGAGCTTTGCCTGAGTTTTCGTATTTAGTATAAAGAGC 30984 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | || || | ||||||| || || ||||| | || ||||| || || Sbjct 30983 TACAAATTCTTCCGAATGACAATCAGCGAGACCTGGGCATTCATTTGGGCAGAAGAGACT 30924 Query 155891 CCAAATTTTATTACCGATTACACGC--TCCATAAATACATCACTCGCCCAAATAGCATAG 155948 |||| || ||| | || |||| ||||| |||| |||| |||||| |||| Sbjct 30923 CCAATCTTGATT--CTTTTGAACGCGTTCCATGAATAAATCAGGAACCCAAAGTCCATAA 30866 Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 || || || ||||| | || || | || |||||||| || | | |||||| Sbjct 30865 AAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTTTTCAGTTGAAGGAATTCA 30806 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC 156068 ||||||| ||| || || ||||| | ||| ||| || || | || || ||| Sbjct 30805 AGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCC 30746 Query 156069 ---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||||| || || |||||||| | ||| || || | | ||| || | || |||||| Sbjct 30745 CCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACAAGACCATTT 30686 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 |||| ||||||||||| ||||||| || |||| |||| ||| ||||| || | | Sbjct 30685 GAAGAACCATTGGTTCCACGAATATAGGAGTTAGATCCACGAATATTGTGAAT-TGAAAT 30627 Query 156186 -CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACC 156244 ||||||||||| | | || || || || || | || | ||| | |||| || Sbjct 30626 ACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCC 30567 Query 156245 TTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGT 156304 ||||||||| || |||| ||| | | ||| | || || | |||||| ||| | || Sbjct 30566 TTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGAGGGCGTCGAGT 30507 Query 156305 TCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTA 156364 ||||| || ||||| || ||||||||||| | ||| ||| | ||||| || || Sbjct 30506 ACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATA 30447 Query 156365 TGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACAT 156424 || ||| || || || |||| | ||| |||| | | ||| | ||| ||| Sbjct 30446 CGTTTCCAAAACTTTTGGAATATTATCCTTGTGTATACCAACTGCGACACGCATGAGCAT 30387 Query 156425 ATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGT 156484 || ||||||||||| ||||| ||||| | | || || |||||||| || || | || Sbjct 30386 GTGTTGAGGACGCTCAACAATTACTCCGTTTACACGTAGTAGGTATGCACGCTCTAAGGT 30327 Query 156485 TTTAAACCCGAAATAATCAAACAGAAAATCACG 156517 || || || || ||| || | | ||||||| Sbjct 30326 CTTGAATCCAAAGTAACCATAATCATAATCACG 30294 >seq99 Length=19583 Score = 111 bits (122), Expect = 5e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229 || || ||||| | | ||| || |||||||| || ||| | |||| |||||| || Sbjct 6675 TCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATTA 6616 Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289 || || || || || |||||||| | || ||||||| || | ||| ||||||| Sbjct 6615 TTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACCA 6556 Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||||| ||||||||||||| ||||| ||| ||||| || ||||||||||| Sbjct 6555 TGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTC 6500 Score = 111 bits (122), Expect = 5e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229 || || ||||| | | ||| || |||||||| || ||| | |||| |||||| || Sbjct 12886 TCTTTTCCACCAAGCAAACGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATTA 12945 Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289 || || || || || |||||||| | || ||||||| || | ||| ||||||| Sbjct 12946 TTCGACCCAACAAAGTTTTGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACCA 13005 Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||||| ||||||||||||| ||||| ||| ||||| || ||||||||||| Sbjct 13006 TGATGATAAGCAGAATGTTCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTC 13061 >seq538 Length=1362 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| | || || |||||| | || || || || | || |||||||||||| Sbjct 107 AATTTCTTTTAGTCGAGGGACACCAAGAGTGACATTT---TTCGCCGAAACACCAGCAAA 163 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 || |||||||||| ||| | ||||| | |||||||| |||||||| || ||||| | Sbjct 164 ATGAAAAGTATTCAAAGTCATCTGAGTTGCAGGCTCACCTATACTTTGCGCAGCAATGAC 223 Query 301935 ACCAACCA 301942 ||||||| Sbjct 224 TCCAACCA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471700003613532