Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq83 269 2e-66 seq287 150 1e-30 seq1818 127 2e-23 seq5361 120 2e-21 seq99 111 1e-18 >seq83 Length=20893 Score = 269 bits (298), Expect = 2e-66 Identities = 560/820 (68%), Gaps = 28/820 (3%) Strand=Plus/Plus Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT------GA 282133 |||||||| ||||||||| |||| | ||| | || || ||| || | || | || Sbjct 14813 CGTTTAGCTCGTTCACATACTGTACGTAGGCGTCTTACTGCTCTTTCAGAGTTTGCGGGA 14872 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGAT- 282191 || | | ||| | |||| | | ||||| ||| | | | ||||| || | ||| Sbjct 14873 TTT---TTTCCTTTGTTTTTT-TGTCGAAATTCTTTTAGAAA--ATGTTCCACAATGATA 14926 Query 282192 -TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 ||||||||||||| ||||| || | |||||| || | ||||| |||| |||| Sbjct 14927 TTATCAAAATCTTCTCCTCCTAAATGAGTATTACCAGCGGTAGCAAGAACTTCAAAAATC 14986 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||| | || | | | ||||| |||||| ||| || ||||||| ||| || || || Sbjct 14987 CCACCCTCTATTGCAAGAAGAGACACATCAAAGGTGCCTCCACCCAAATCGAATATGAGA 15046 Query 282311 A--CATTCATTTCTTTGTCTTGGTTT--TTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 | | | || | | ||||| ||||| | |||||| || | |||||||||||| Sbjct 15047 ATGCGGCGAACTCCAGAT-TCGGTTTGTTTATCCAAACCATAGGCTATAGCAGCAGCAGT 15105 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 ||| ||||||||||||| ||||| | ||| |||||||| || || |||||||| || | Sbjct 15106 TGGCTCATTAATAATTCGTAAAACTTGAAGTCCAGCAATACTGCCAGCATCTTTCGTTGA 15165 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| | ||| | ||| || ||||| || ||||||||||| || ||| | ||| || Sbjct 15166 TTGACGTTGAGCATCATTGAAATACGCTGGAACAGTAATTACTGCACTAGAGACTGATTC 15225 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | ||| | || || |||||| || ||| | |||||| || |||| || Sbjct 15226 ACCCAAATAGTCTTCAGCAATTGTTTTCATCTTTGATAACACCATTGAAGATATTTCCTC 15285 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT-AT-GGTTTATTACCA 282604 | |||| | || | |||| | | || ||| | ||| || ||||||| ||| Sbjct 15286 AGCAGAAAAATGTCTCTCTTCACCTCGCCATTCAACT--AGAATCATCGGTTTATCACCT 15343 Query 282605 ACAT---TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 | ||| |||||||||||||| | | | | ||| || || | || || Sbjct 15344 GCTCCGCTAAATACTTTAAATGGCCAGTGTGTTAAATCATTCTGTACCACGGGATCTGTA 15403 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 ||| || || |||| || ||||| |||||||||||||| || ||||| | ||| || Sbjct 15404 AAAGTTCGCCCGATTAGACGCTTTGCGTCAAAAATAGTATTTGTGGGATTCAAAGCAACT 15463 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 ||| ||| || || |||||||| || | || || || | || | |||||||||||| Sbjct 15464 TGACTTTTTGCAGCGTCTCCAATTAGTCGCTCCGTATCATTGAAAGCTACATATGATGGA 15523 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || |||| |||||||| || | ||||||||| || | | |||| ||||| ||||| Sbjct 15524 GTCGTCCGATGTCCTTGATCGTTTGAAATAATTTCCACCTGATCATTCTGCCAAACACCA 15583 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAA 282881 |||||| | | || || || | || |||||||| |||| Sbjct 15584 ACACAAGAATATGTCGTCCCAAGGTCTATACCAAT-GCAA 15622 Score = 156 bits (172), Expect = 3e-32 Identities = 201/272 (74%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 281632 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACC 281691 ||||| || || |||| | |||||| |||||||||| ||||||||| |||| | ||| Sbjct 14159 AGGAAGAGTCGTATTTCGAAGAATAATTTTGGTCATAACACCACCAGCCGTTTGAACACC 14218 Query 281692 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTG-AC 281750 | || | ||||| ||||| | ||| | || || | ||||| | || | || Sbjct 14219 GACGGATAAAGGAGCCACATCTAATAGTAAAAGTTTCTCT-GTTTTGGAAGAGGTAACAC 14277 Query 281751 CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG 281810 || | || ||||| ||||||| |||||| |||||||||||||||||||| |||||| | Sbjct 14278 CATCGAGTATAGCAGCTTGAACAGCAGCTCCATATGCAACAGCTTCATCTTGATTAATCG 14337 Query 281811 TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATA 281869 | ||| ||||| |||||||||||| ||| | |||||| | ||| ||| | ||||| Sbjct 14338 ACTGATTCAGTTTCTTACCATTGAAATAATCTTGAAGAAGAT-TCTGCACCATTGGAATC 14396 Query 281870 CGAGATGATCCTCCAACTAATACAATTTCATG 281901 |||||||| || || || | ||| | |||||| Sbjct 14397 CGAGATGAACCACCTACAAGTACCACTTCATG 14428 >seq287 Length=11809 Score = 150 bits (166), Expect = 1e-30 Identities = 210/292 (72%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||| |||||||| ||||| | | ||||| || | || || | ||||| |||| || Sbjct 223 ATCGAAATCTTCCCCTCCAAGATGAGTATCACCAGCAGTTGCACGTACTTCAAAAATACC 282 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 |||||||| | ||| | |||||| || |||||||| | |||||| || | ||| Sbjct 283 ATCTTCAATTTGGAGAAGGGATACATCAAATGTACCACCACCAAGATCAAATATTAATAC 342 Query 282313 ATTCATTTCTTTGTCT-TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | | | | || | | | ||| | ||||| || | ||| |||||||| |||| Sbjct 343 AGACTGTGGGGTATCGCTACTCCCTTTCATG-CCATATGCTATAGCTGCAGCAGTAGGTT 401 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| |||||||||| |||||||| |||||||| | || ||||||||||| || | | Sbjct 402 CATTGATAATTCTCATGACATTAAGGCCAGCAATACGACCAGCATCTTTAGTAGCATTAC 461 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||| ||||||||||||||||||||| ||||| || |||| ||||||| Sbjct 462 GTTGACTATCGTTAAAATATGCAGGAACTGTAATCACAGCATTCTTTACTTC 513 >seq1818 Length=990 Score = 127 bits (140), Expect = 2e-23 Identities = 311/461 (67%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 281261 TAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCT-GCTTCTTC 281319 || ||||| ||| |||| |||| | ||||| ||||| || | |||| | |||| Sbjct 503 TAGTTTTCGAATGCATTCTTAGCAACAACACGAGCTTGTTGAGCTTCATCTTGGCTCTTG 444 Query 281320 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT 281379 || || || |||||| ||| ||| | ||||||| ||||| || || | || |||| Sbjct 443 AACTT-TTCAGCTTCATTAACCATGCGGTCAATTTCATCTTTGGACAAGCGACCA-GATT 386 Query 281380 A-TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 281438 || |||| ||| || || ||| || || || ||||| || |||| Sbjct 385 CGTTTTTAATTTGAATCTTGTTTTCTTTTCCAGTAGAAACTTCTTTAGCAGTTACGTTAA 326 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA-GCA 281497 |||||||||| ||||| | ||| |||| || ||||||||| || || | || ||| Sbjct 325 GAATACCATTAGCATCAATATCGTATGTAACGCAAATTTGAGGAACACCAC---GAGGCA 269 Query 281498 --GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555 |||||||| || || | | |||| | || || | || |||||||| || | | Sbjct 268 TTGGTGGGATTCCATCGAGTTGAAATTTACCAAGTCTGTTGTTATCTTTGGTCATGGAAC 209 Query 281556 GTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA 281615 ||||||| || ||| ||| || ||| ||||||| ||||| || || || | || | Sbjct 208 GTTCACCTTCATAAACTTGAATCAAGACTCCAGTTTGGTTATCAGAGTAGGTGG--AAAA 151 Query 281616 CTCTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACC 281673 | ||| || || ||||| || ||||| | ||||| | | ||||| | ||| Sbjct 150 GGTTTGATCCTTCTTTGCTGGAATGGTAGTGTTACGCTCAATGAGGGTAGTCATGACACC 91 Query 281674 ACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||||| ||||| | |||||||||||| || || ||||||| Sbjct 90 TCCAGCGGTTTCAAGACCAAGAGAAAGTGGGGTTACATCAA 50 >seq5361 Length=1785 Score = 120 bits (132), Expect = 2e-21 Identities = 245/355 (69%), Gaps = 18/355 (5%) Strand=Plus/Minus Query 281555 CGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTT-GATTATCTGAATAAGTTGTAA 281612 ||||| || || || | |||||| || | ||| ||| |||||||| || |||||||| Sbjct 584 CGTTCTCCTTCAAACACTTGGATCAGCA--TACTTTTTTGATTATCTTCATGAGTTGTAA 527 Query 281613 ATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 281672 | | | | ||||||| ||| | || || || | ||| | | ||| ||| | || Sbjct 526 AGATTTGTGTTTTTTTAGTAGGCACAGTAGTATTACGTGGAATTAAAATGGACATTACAC 467 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 281732 |||| || ||||| | || | || ||||| || ||||||| || | ||||| || | Sbjct 466 CACCTGCGGTTTCGAGCCCTAATGAGAGAGGCGTAACATCAAGTAATAAAATATCTTCAC 407 Query 281733 GTTTTTCATCA---GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 |||| || |||||| ||| |||| ||||||||||| | ||||| |||| | Sbjct 406 CAGCTTCACCAATAGTTTGATCAA---GAATTGCTGCTTGAATCGTCGCACCCCATGCTA 350 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT--TGAAAG 281847 |||||||||||||||||| | ||| ||| | ||| || | |||||| | || || Sbjct 349 CAGCTTCATCAGGATTAATACTTTTATTCGGAGGTTTTCC-TCCAAAAAACTCCTGTAAC 291 Query 281848 AAG--TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 | | ||| ||| || |||||||| | || || ||||| | |||| ||||| Sbjct 290 ATGGCTTG---TACTTTTGGAATACGTGTCGAACCACCAACAAGAACAACTTCAT 239 >seq99 Length=19583 Score = 111 bits (122), Expect = 1e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| |||||| |||| || || |||| | Sbjct 5494 TGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAAGCATTAGCGATTGCTGGATTATCA 5553 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||| |||||| ||| ||| || || ||| | | |||||||| ||| ||||| | Sbjct 5554 GTCATTGGTAGAGATAATTTTGGTGTATTTCCATTGAAAGGAAAACCTTTAAATGTACGT 5613 Query 400417 GATGCTA-GTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGT 400475 ||||||| || | ||| ||| | || || ||||| | |||| | ||| | | Sbjct 5614 GATGCTACGTAC-GCAAATATTAAAAAGAACGAAGAAATCCAAACAATTATTAAAGTGAT 5672 Query 400476 TGGACTTGAACAAGGAAAAGTTTATGA------TGATCTCAAAGGTTTACGATATGGTAG 400529 ||| | || | | |||| ||| || || | ||| | | || |||||| Sbjct 5673 TGGGTTAGATCGAAATAAAGATTACGAACAAGTTGGATTGAAATCTCTTCGGTATGGTTC 5732 Query 400530 TATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAA 400589 | |||||||| | ||||||||||| | |||||| | || |||||||| | | || || Sbjct 5733 TGTTATGATTATGGCTGATCAAGACGATGATGGTTCTCACATCAAAGGTCTTTTAATTAA 5792 Query 400590 TTTTATCCATTG 400601 |||| | |||| Sbjct 5793 TTTTTTTGATTG 5804 Score = 111 bits (122), Expect = 1e-18 Identities = 213/312 (68%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| ||||||| || ||||||||||| |||||| |||| || || |||| | Sbjct 14067 TGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAAGCATTAGCGATTGCTGGATTATCA 14008 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||| |||||| ||| ||| || || ||| | | |||||||| ||| ||||| | Sbjct 14007 GTCATTGGTAGAGATAATTTTGGTGTATTTCCATTGAAAGGAAAACCTTTAAATGTACGT 13948 Query 400417 GATGCTA-GTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGT 400475 ||||||| || | ||| ||| | || || ||||| | |||| | ||| | | Sbjct 13947 GATGCTACGTAC-GCAAATATTAAAAAGAACGAAGAAATCCAAACAATTATTAAAGTGAT 13889 Query 400476 TGGACTTGAACAAGGAAAAGTTTATGA------TGATCTCAAAGGTTTACGATATGGTAG 400529 ||| | || | | |||| ||| || || | ||| | | || |||||| Sbjct 13888 TGGGTTAGATCGAAATAAAGATTACGAACAAGTTGGATTGAAATCTCTTCGGTATGGTTC 13829 Query 400530 TATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAA 400589 | |||||||| | ||||||||||| | |||||| | || |||||||| | | || || Sbjct 13828 TGTTATGATTATGGCTGATCAAGACGATGATGGTTCTCACATCAAAGGTCTTTTAATTAA 13769 Query 400590 TTTTATCCATTG 400601 |||| | |||| Sbjct 13768 TTTTTTTGATTG 13757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740324238753336