Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq458 262 9e-65 seq99 154 3e-32 seq432 132 1e-25 seq2984 116 9e-21 seq455 111 4e-19 seq4471 98.7 2e-15 >seq458 Length=35501 Score = 262 bits (290), Expect = 9e-65 Identities = 587/871 (67%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344 |||||| |||||| || || ||||| ||||| || | || ||||| || |||| || Sbjct 30293 TCGTGATTATGATTATGGTTACTTTGGATTCAAGACCTTAGAGCGTGCATACCTACTACG 30352 Query 110345 TGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTAT 110404 ||| || || | || |||| ||||||||||||||| | | ||||| || ||||||| Sbjct 30353 TGTAAACGGAGTAATTGTTGAGCGTCCTCAACACATGCTCATGCGTGTCGCAGTTGGTAT 30412 Query 110405 TCATGGACATGATATTAAAGCTGTTATTGAATGTTATGA--TG-TATTAAGTAAAAAGAA 110461 || || ||||| | ||| | ||| ||||| || | | || |||| | | Sbjct 30413 ACACAAGGATAATATTCCAAAAGTTTTGGAAACGTATGAAATGATGTCAACTAAACATTA 30472 Query 110462 AGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTC 110521 | ||||| || || ||||||||||| || || ||| | ||| || | || Sbjct 30473 CACA---CATGCAACACCAACCCTATTTAATGCTGGTACTCGACGCCCTCAAATGTCATC 30529 Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 || ||||| | || || || || ||||||||||| |||||||| |||||||| | Sbjct 30530 CTGTTTTCTCATGACTATGAAAGAAGACTCTATTGAAGGAATTTATGACACTCTTAAAAA 30589 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC-- 110639 ||| || || || | |||| || ||||||||| |||| ||||||| Sbjct 30590 TTGTGCATGCATCTCGAAGTATGCTGGTGGTATTGGTATTTCAATTCACAATATTCGTGG 30649 Query 110640 -TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTT 110698 || || | |||| | | || ||| |||||| ||| ||||| |||||||| Sbjct 30650 ATCTAACT---CCTATATTCGTGGAACCAATGGTTCTTCAAATGGTCTTGTACCAATGTT 30706 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTC 110755 ||||| || || || ||||| || || ||||||| || || |||| || || Sbjct 30707 GAGAGTTTTTAATGATACTGCTCGTTACGTTGATCAAGGGGGAGGAAAACGAAAAGGATC 30766 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 || ||| | ||||||||||||||||||| ||||| |||||||| | |||| || Sbjct 30767 TTTCGCTGTTTATCTCGAACCTTGGCATTGTGATATTCTTGAATTCCTTCAACTGAAAAA 30826 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 ||||| || |||||| | ||| | ||| | ||||||| | | ||| || | || Sbjct 30827 GAATCATGGTAAAGAAGAAGCGCGTGCAAGAGATCTCTTTTATGGACTTTGGGTTCCTGA 30886 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGT 110933 |||||||||| |||| |||||| | ||| || | ||| ||| | || || || Sbjct 30887 TTTATTCATGGAACGCGTTCAAAAGAAT--CAAGATTGGAGTCTCTTCTGCCCAAATGAA 30944 Query 110934 TCTCCTGGTCTATCTGA-TGT-ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 | || ||||| |||| ||| || || |||| |||| || ||||| ||||| | Sbjct 30945 TGCCCAGGTCTCGCTGATTGTCATTCGG--AAGAATTTGTAGCTCTTTATACTAAATACG 31002 Query 110992 AAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 |||| |||||| ||| | | || ||||||| |||||||||| |||| | | Sbjct 31003 AAAACTCAGGCAAAGCTCGTACAACGATGAAAGCTCAAAAACTTTGGTTTCAAATATTGG 31062 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAAT 111111 | || || | ||||| |||||||| ||||| | | |||||| | |||| |||||| Sbjct 31063 AGTCTCAGATCGAAACCGGAACTCCCTATATGTGTTTCAAAGATGCTTGTAATAGCAAAT 31122 Query 111112 CTAATCAAATGAATTTAGGAACAATTAAGTC 111142 |||| |||| ||| | ||||| || || || Sbjct 31123 CTAACCAAAAAAATCTTGGAACTATCAAATC 31153 >seq99 Length=19583 Score = 154 bits (170), Expect = 3e-32 Identities = 234/333 (70%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| ||||| | ||||| | ||||| | | ||||||| Sbjct 6368 GATTTCATTAATAATGAACTCATCCAATATTCTAGAGCTACTGTTCGTAGAGCTATTCCG 6427 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | || ||||| || |||||||| || | || || | || ||||| ||| | Sbjct 6428 TGTATTATTGATGGATTCAAACCTTCTCAAAGAAAAGTTTTGTTTGCATGTTTTAAACGT 6487 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 ||| || || |||||| |||||||| ||||| |||||||| ||||||||| | | | Sbjct 6488 AAACTGACTAAAGAAATTAAAGTTGCTCAATTAGCTGGTTATGTCTCAGAACATTCTGCT 6547 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 |||||||| ||||||| || | ||||| ||||||| || | || ||| | ||| | Sbjct 6548 TATCATCATGGTGAAGTTTCCTTACAAGGAACTATTGTGAGTATGGCTCAAAACTTTGTT 6607 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAAT 280105 | || || || | ||| | | | ||| ||||||||||||| | ||| | | | Sbjct 6608 GGGTCGAATAATATTAATTTATTATACCCAGGTGGTCAATTTGGTACACGTTTGCTTGGT 6667 Query 280106 GGAAAAGATCATGGTAGTGCTCGTTACATACAT 280138 ||||||||||| | ||||||||||| ||||| Sbjct 6668 GGAAAAGATCACGCGAGTGCTCGTTATGTACAT 6700 Score = 154 bits (170), Expect = 3e-32 Identities = 234/333 (70%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| ||||| | ||||| | ||||| | | ||||||| Sbjct 13193 GATTTCATTAATAATGAACTCATCCAATATTCTAGAGCTACTGTTCGTAGAGCTATTCCG 13134 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | || ||||| || |||||||| || | || || | || ||||| ||| | Sbjct 13133 TGTATTATTGATGGATTCAAACCTTCTCAAAGAAAAGTTTTGTTTGCATGTTTTAAACGT 13074 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 ||| || || |||||| |||||||| ||||| |||||||| ||||||||| | | | Sbjct 13073 AAACTGACTAAAGAAATTAAAGTTGCTCAATTAGCTGGTTATGTCTCAGAACATTCTGCT 13014 Query 279986 TATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATG 280045 |||||||| ||||||| || | ||||| ||||||| || | || ||| | ||| | Sbjct 13013 TATCATCATGGTGAAGTTTCCTTACAAGGAACTATTGTGAGTATGGCTCAAAACTTTGTT 12954 Query 280046 GCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAAT 280105 | || || || | ||| | | | ||| ||||||||||||| | ||| | | | Sbjct 12953 GGGTCGAATAATATTAATTTATTATACCCAGGTGGTCAATTTGGTACACGTTTGCTTGGT 12894 Query 280106 GGAAAAGATCATGGTAGTGCTCGTTACATACAT 280138 ||||||||||| | ||||||||||| ||||| Sbjct 12893 GGAAAAGATCACGCGAGTGCTCGTTATGTACAT 12861 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 279095 GCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCT 279154 || || || |||||| | || ||| ||||| || | |||||||||||||||||| Sbjct 5470 GCAGGTGGCCGTAAAAGTTCTGATTGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAA 5529 Query 279155 ACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTA 279214 |||| ||||||||||| ||||| || |||||| | ||||| | ||| |||||||| || Sbjct 5530 GCATTAGCGATTGCTGGATTATCAGTCATTGGTAGAGATAATTTTGGTGTATTTCCATTG 5589 Query 279215 AGAGGTAAAGTAATTAATGCTCGTGAT 279241 | ||| ||| | |||| |||||| Sbjct 5590 AAAGGAAAACCTTTAAATGTACGTGAT 5616 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 279095 GCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCT 279154 || || || |||||| | || ||| ||||| || | |||||||||||||||||| Sbjct 14091 GCAGGTGGCCGTAAAAGTTCTGATTGTACTTTAATTTTAACTGAGGGAGATTCTGCTAAA 14032 Query 279155 ACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTA 279214 |||| ||||||||||| ||||| || |||||| | ||||| | ||| |||||||| || Sbjct 14031 GCATTAGCGATTGCTGGATTATCAGTCATTGGTAGAGATAATTTTGGTGTATTTCCATTG 13972 Query 279215 AGAGGTAAAGTAATTAATGCTCGTGAT 279241 | ||| ||| | |||| |||||| Sbjct 13971 AAAGGAAAACCTTTAAATGTACGTGAT 13945 >seq432 Length=58906 Score = 132 bits (146), Expect = 1e-25 Identities = 316/471 (67%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 279872 ATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTG 279931 || ||||| | ||||| || ||||| || || | || |||||| ||| | ||||| Sbjct 37293 ATTGATGGACTCAAACCATCTCAGCGAAAAGTTCTTTTTGCTTGTTTTAAACGTAAATTA 37234 Query 279932 GTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCAT 279991 || || | || || ||| | ||||| || ||||| || ||||| | |||||| Sbjct 37233 ACCAAAGAGCTGAAAGTAGCACAGCTTGCAGGATACGTTTCTGAGCATGCTGCGTATCAT 37174 Query 279992 CACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCA 280051 || ||||||||||| | ||| | ||||| ||| | || ||| ||| | | | ||| Sbjct 37173 CATGGTGAAGCGTCGTTAATGGGTACAATTGTGGGTATGGCACAAAATTATGTTGGTTCT 37114 Query 280052 AACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAA 280111 || || | || || | | || ||||||||||||| | ||| |||| ||||||| Sbjct 37113 AATAATCTCAACCTTTTATATCCTGGTGGTCAATTTGGTACACGTCTTCAAGGTGGAAAA 37054 Query 280112 GA-TCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAA-ACAAGTTAT 280169 || ||| || ||||||| || ||| | | | || ||||||| ||| ||| Sbjct 37053 GATTCAGCGT-CACCTCGTTATATTTTTACTCGATTAGCTGAAATTACAAGACA---TAT 36998 Query 280170 TTATCAATTC--TGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATTGA 280227 || ||| | |||| ||||| | | || | || || ||||| ||| | | |||| Sbjct 36997 TTTTCATCCCGATGATGATGCTATACTTGATTACCTTGATGATGACGGTATAAGTGTTGA 36938 Query 280228 ACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATG---GTGCTCAAGGAAT 280284 ||| |||| ||| |||| |||| || | | |||||||||| ||||| || || Sbjct 36937 ACCTTCATACTATTGTCCAGTTATTCCACTTGTGCTTGTTAATGGATGTGCT---GGTAT 36881 Query 280285 TGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCAATTGATATTAT 280335 ||| || |||| |||||| || || | |||||||| | |||||||| Sbjct 36880 TGGTACGGGTTGGTCTACAGAAATTCCTAATTACAATCCCAAAGATATTAT 36830 >seq2984 Length=810 Score = 116 bits (128), Expect = 9e-21 Identities = 121/154 (79%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||| ||| |||||||||| ||||||| |||||||| |||| ||||| ||| | || | Sbjct 55 TGTTTAATCGGCAACCATCGTTGCATAAGATGTCTATTATGGGTCATAGAGT--ACGTGT 112 Query 305394 TAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG-CCTTATAATGCGGATT 305450 || || | |||||||| |||| || ||| ||||| | || |||||||| |||| Sbjct 113 GATGCCTTTCTCTACATTTCGTATAAACGTTTGTG-TTGTAGGACCATATAATGCTGATT 171 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||||| ||||| |||||||||||||| ||||| Sbjct 172 TTGATGGTGATGAGATGAATATGCATGTCCCTCA 205 Score = 116 bits (128), Expect = 9e-21 Identities = 121/154 (79%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||| ||| |||||||||| ||||||| |||||||| |||| ||||| ||| | || | Sbjct 415 TGTTTAATCGGCAACCATCGTTGCATAAGATGTCTATTATGGGTCATAGAGT--ACGTGT 472 Query 305394 TAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG-CCTTATAATGCGGATT 305450 || || | |||||||| |||| || ||| ||||| | || |||||||| |||| Sbjct 473 GATGCCTTTCTCTACATTTCGTATAAACGTTTGTG-TTGTAGGACCATATAATGCTGATT 531 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||||| ||||| |||||||||||||| ||||| Sbjct 532 TTGATGGTGATGAGATGAATATGCATGTCCCTCA 565 >seq455 Length=37354 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 305282 CTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAAT 305341 ||| ||||| |||||||||| | ||||| | ||| |||| ||| |||| ||| Sbjct 30430 CTTAAAATTGGTGATATTGTTGAACGTCATTTAATTGATGGTGATGTAGTTTTGTTTAAT 30489 Query 305342 AGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATC-TGG 305400 | ||||| || || ||||| ||||| || ||| ||||| || || ||| | | ||| Sbjct 30490 CGCCAACCTTCCCTTCATAAGATGTCAATTATGTCTCATTGTGTAAAGGTAATGCCATGG 30549 Query 305401 ATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGA 305460 | || |||||||| |||| | ||| || | || |||||||| ||||||||||| || Sbjct 30550 AGA-ACTTTTCGATTTAATGAATGTGTATGCTCTCCATATAATGCCGATTTTGATGGTGA 30608 Query 305461 TGAAATGAATATGCATGT 305478 ||| |||||||| ||||| Sbjct 30609 TGAGATGAATATTCATGT 30626 >seq4471 Length=2325 Score = 98.7 bits (108), Expect = 2e-15 Identities = 188/277 (68%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 72131 TATTACCAATTTCATGAATGTAATTCATTCCAGAAGTTACTTTGCCAAACACAACGTGTT 72190 |||| |||||| | |||| || ||| || | | |||| ||||||||||| |||| Sbjct 528 TATTTTCAATTTTACGAATAATATCCATACCTTGAATCACTTCACCAAACACAACATGTT 587 Query 72191 TGTTATTTAAATGTGGTTGAGGTGCAAGTGTAATGAAGAATTGCGAGTTATTTGAATCAG 72250 | || |||||| || | | |||||| |||||||| || ||||| || | Sbjct 588 TACCATCTAAATGAGGAGTAACGGTTGTTGTAATAAAGAATTGAGAACCATTTGTATTCG 647 Query 72251 GACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAATGCTTTAATAAGAAATTCTCAT 72310 | || | || ||||| || | ||||||||||| | ||| |||| | |||||||||| Sbjct 648 GTCCAGCATTCGCCATGGATAACAAACCTGCTTTGGTATGTTTTACTCGAAAATTCTCAT 707 Query 72311 CTTCAAAAGTTTCTCCATATATACTTTGACCTGAGCTTCCATCAAAGTTCACAATATCAC 72370 | |||| | | ||||| ||||||| ||| | |||| | || | ||| | Sbjct 708 CAGCAAATTTAGCACCATAAATACTTTTACCACCAGTACCATTATGATTTGTGAAATCTC 767 Query 72371 CTCCTTGAACCATAAAATTATTAATTACTCTATGGAA 72407 |||||||| |||||||| ||||| || | ||| || Sbjct 768 CTCCTTGACACATAAAATCTTTAATGACGCGATGAAA 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186717975140796