Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq352 208 1e-48 seq458 190 3e-43 >seq352 Length=10598 Score = 208 bits (230), Expect = 1e-48 Identities = 622/944 (66%), Gaps = 22/944 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGTGACAT---AACTCCCATTT 39326 ||||||||||| |||||||||||| || ||||| | | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || |||||||| ||||| || ||||| || ||||| |||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 ||| | ||||| ||||| | | |||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | ||| ||| ||||| |||||| ||| | | | |||||||||| || |||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAA-CTCTTTT-TCGATGTCTACGGCCTCTGTTATTAT 39564 ||||||| ||| || | | ||| ||||||| | ||| | || || | || || Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTTTTCTTGAT--CAACAGCTGATACAATGAT 7032 Query 39565 CGATGTTACTACCTCATCACTCG--GTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 | || || || || | | || || | | || ||| ||| | || || Sbjct 7033 CTCGGTAAC-ACGAGATTT-TGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCA 7090 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 ||||| || |||| || ||||| | ||||||||| || || || |||||||| ||| Sbjct 7091 AAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGC 7150 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCC 39741 || | ||| || ||||| | |||||| || | |||||| || ||||| ||||| || || Sbjct 7151 ATCAAACCTCGTTTTTTTAACCAAAAAATA-CTGCAAAATGAACCAGAGAAGAAAATTCC 7209 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGTATCATTATGTA--TCC 39797 |||||| || || || || ||||||| || | || | |||| || ||| ||| Sbjct 7210 TTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTT-TGTCAGTCC 7268 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | | ||||| |||| |||| || || ||||| | ||||| || || || || | Sbjct 7269 ATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACA 7328 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | || ||| || | | || ||| | || || || | ||| ||||| ||| | Sbjct 7329 AGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCG 7388 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| ||||||||||| || || ||||| || ||||| |||| ||||||| | ||| | Sbjct 7389 AATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCA 7448 Query 39978 CCTCT--GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 ||| | ||| | || ||||| ||||| || || ||||||||||| || ||||| Sbjct 7449 TGTCTTCCATGAAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAA 7506 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 || || | | || ||| || | ||| || | || | ||| | |||| | Sbjct 7507 GAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTCCCT 7566 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | || | | | || | |||||||| |||||||| || ||||| || || || || Sbjct 7567 TGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATA 7626 Query 40156 CATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 ||| | ||| || ||| || |||||||| | |||||||| Sbjct 7627 CATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 190 bits (210), Expect = 3e-43 Identities = 572/869 (66%), Gaps = 28/869 (3%) Strand=Plus/Minus Query 69276 AGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACA 69335 ||| || |||||||| || || | |||| | | ||||| || ||||| ||||| Sbjct 31223 AGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTATATTCCATAATCTCAGTACA 31164 Query 69336 TAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTC 69395 ||||| |||||||||| || ||||||| || ||| || | ||||| || || Sbjct 31163 AAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGGTTAGATTTGCTATTACAAGCATC 31104 Query 69396 CTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGA-TAATAGATTTCCAAA 69454 ||| || ||| | ||||| || ||||| |||||||| || | || | || ||||| Sbjct 31103 TTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAGACTCCAATATTTGAAA-CCAAA 31045 Query 69455 CGACCCTAGCATTTATTACGGTCTTGTAAC-GCTTCTCTT----TTTCATATTGTGTATA 69509 ||| || || || ||||| |||| | | |||| |||| ||||| Sbjct 31044 GTTTTTGAGCTTTCAT--CG---TTGTACGAGCTTTGCCTGAGTTTTCGTATTTAGTATA 30990 Query 69510 TAGCCGTTCGAATTCATCTCCCCAA--ACA-TCATCCAATCCAGGACATTCATTTGGACA 69566 || | | ||||| || | || ||| ||| | | || || ||||||||||| || Sbjct 30989 AAGAGCTACAAATTCTTC---CGAATGACAATCAGCGAGACCTGGGCATTCATTTGGGCA 30933 Query 69567 CATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATAGATCGGGAATCCA 69623 | | ||| || ||| | || ||| ||| |||| ||| |||| ||| |||| ||| Sbjct 30932 GAAGA--GACTCCA-ATCTTGATTCTTTTGAACGCGTTCCATGAATAAATCAGGAACCCA 30876 Query 69624 AAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATC 69683 ||| | |||||||||||| | | |||||| || || ||| ||||| || | Sbjct 30875 AAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCTTTTTCAGTTG 30816 Query 69684 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCG 69743 || || || | ||||||| ||||||| ||||| ||||| | || | ||| ||| Sbjct 30815 AAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCG 30756 Query 69744 TTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAAT 69803 ||| ||| || ||||| | ||| | ||||| | |||| | ||||||| ||| || | Sbjct 30755 TTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTAC 30696 Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCGCGAATATTA 69861 || |||||| || |||||| |||||| |||||| | || | | |||||||| Sbjct 30695 AAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTT--AGATCCACGAATATTG 30638 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 ||| || | ||| || || || || || ||||| |||||| ||| | ||| Sbjct 30637 TGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTG 30578 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 ||||| || || || || || ||| |||| | | ||||||||| ||||||||| Sbjct 30577 TCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATGACATTTGA 30518 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 | || ||| || |||||||||| || || | ||| || ||| | ||| || Sbjct 30517 GGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTAATGTTTAGTTGAC 30458 Query 70042 AGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACA 70101 | || | || ||||| | | || | |||| || || || || | |||||| Sbjct 30457 ATCATTTCATACGTTTCCAAAACTTTTGGAATATTATCCTTGTGTATACCAACTGCGACA 30398 Query 70102 CGCATCAACATATGCTGAGGTCGTTCTAC 70130 ||||| | ||| || ||||| || || || Sbjct 30397 CGCATGAGCATGTGTTGAGGACGCTCAAC 30369 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 68721 AAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 68780 |||||| |||| | |||||||| | |||||||| || |||||||| | | |||| Sbjct 31879 AAATTCACCAGCAAGAACTCTACGTGAATAAATATTTGAAGTGTATGGTTCGAAACATTC 31820 Query 68781 ATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGC 68825 ||||||||||| ||||||| ||| || || ||||||||||| || Sbjct 31819 ATTATTTCCCAATATTTGAGAAGTAGAAGCTGTTGGCATAGGAGC 31775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686855255459040