Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq352 271 6e-68 >seq352 Length=10598 Score = 271 bits (300), Expect = 6e-68 Identities = 599/885 (68%), Gaps = 30/885 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | |||||||| || |||||| ||| ||||||| || ||||| |||| Sbjct 7668 TTTGTTCTCTTTCCAATCGTTCATTCTGACATTTGGGAAATGTATAAGAAAGCTGAGGCC 7609 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| || ||||| | || | | | ||| ||| ||| | | | Sbjct 7608 TCCTTTTGGACGGCTGAAGAGCTCGACCTTGCGAGTGAC-----ACAAGGGACTACGAAA 7554 Query 43820 AAACCACAA-----GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 || | || ||| || || || ||| || | ||||| |||||||| || | Sbjct 7553 AACTCTCATCGGACGAACGTCACTTCATTTCTCACATTCTCGCGTTCTTTGCTGCAAGTG 7494 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || || ||||| |||| | || | |||| | |||| | |||| Sbjct 7493 ATGGAATTGTAAACGAAAACTTGGCAACCAATTTCATGGAAGACATGCAATGTGCTGAAG 7434 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | ||||| |||||||| ||||||||||| || ||||| |||||||||||| |||| || Sbjct 7433 CGCGATGCTTTTATGGTTTTCAAATTGCTATTGAAAACATTCATTCGGAAGTGTATTCTC 7374 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 |||| || || |||| || | || |||||| ||| ||||| || || || | Sbjct 7373 TTCTTATTGACACGTTAATTACTGAGAAAGCCGAGAAAAATCACTTGTTAAACGCAATCG 7314 Query 44055 AAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT--AAATTCAA 44111 |||| || ||| ||| ||||| | || || | ||||| ||| |||||| | | ||| Sbjct 7313 AAACTGTCCCTTGCG-TTAAAGAGAAGGCTGCATGGGCTCTTCAATGGACTGACAAACAA 7255 Query 44112 -ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | ||||||| ||||||||||| ||||| || | ||| ||||| |||||||| || Sbjct 7254 TACGCGTCTTTTGCTGAACGACTTGTAGCGTTCGCTGCTGTAGAAGGAATTTTCTTCTCT 7195 Query 44171 GGATCGTTT-GCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 || || ||| || | || ||||||||||| ||||||||||||||||| || | || || Sbjct 7194 GGTTCATTTTGCAGT-ATTTTTTGGTTAAAAAAACGAGGTTTGATGCCAGGACTCACTTT 7136 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACT 44289 || ||||| ||||| || |||||||| ||||| ||||| | |||| ||| | Sbjct 7135 CTCGAATGAATTAATTTCACGCGATGAAGGTTTACACTGCGACT----TTGCATGTCTCG 7080 Query 44290 TGGATATCTAG-GAGACGATAAGCCTTCATGTAAGAC---AATTACAGATATTGTTGTAG 44345 || ||| | || | |||| | | || || | |||| || || ||||| Sbjct 7079 TGTATAACCAGCTTGTAAATAAACTTCCA---AAATCTCGTGTTACCGAGATCATTGTAT 7023 Query 44346 AGGCAGTAAAGATAGAACAAGA-ATTTATGACAACAGCATTACCTGTAAATTTAATAGGA 44404 || || | |||| |||| |||| | | || ||||| ||| | | || ||| Sbjct 7022 CAGCTGTTGATCAAGAA-AAGAGATTTGTCAGTGATGCTTTACCAGTAGAACTTATTGGA 6964 Query 44405 ATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 |||||| || ||| |||||| ||||||| | ||| |||||| | | | | Sbjct 6963 ATGAATTCTACATTAATGTGCCAATACATTGAATTCTGTGCTGATCGTCTTATCTACCAG 6904 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 || || || |||||| |||| | |||| || ||||| | ||| | |||||| Sbjct 6903 CTTGGGTGTGATAAAGTTTATAATACGAAAAATCCATTTGAATGGATGAATCTTATTTCT 6844 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATAT 44569 || |||| ||||||||||||||||||||||| ||||| || ||| Sbjct 6843 TTACAAGGAAAAACAAACTTTTTTGAAAAACGTGTTGGTGAGTAT 6799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425792847180