Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq352 96.9 4e-15 seq458 93.3 5e-14 >seq352 Length=10598 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||| || || || || || | |||||||||||| || ||| Sbjct 7088 GCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCT 7147 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| || || || ||||| ||||| |||||||| ||||||||||| || Sbjct 7148 GGCATCAAACCTCGTTTTTTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATT 7207 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || ||| |||||||| | || || |||||||| || Sbjct 7208 CCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGA 7248 >seq458 Length=35501 Score = 93.3 bits (102), Expect = 5e-14 Identities = 403/629 (64%), Gaps = 9/629 (1%) Strand=Plus/Minus Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCC-TCTGAGAGCCCTGGTGC 118993 ||||| || || || || ||| |||| ||||| | | | | || | ||| ||||| || Sbjct 31003 TCGTATTTAGTATAAAGAGCTACAAATTCTTC-CGAATGACAATCAGCGAGACCTGG-GC 30946 Query 118994 CTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || || ||||||||||||| ||| | | || | ||| || | |||||| | | Sbjct 30945 ATTCATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAATAAAT 30886 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | || | ||| || | | |||||||| | || |||||||| | || ||||| Sbjct 30885 CAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCATGATTCT 30826 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 || | | || || | ||||| ||||| ||||| || || || |||| | Sbjct 30825 TTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAGCGAAAG 30766 Query 119173 ACCCCTTACGACGACCAGCC---TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAA 119229 | || || || || || || | || || | ||||| | ||||| || | | Sbjct 30765 ATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAACTCTCA 30706 Query 119230 GCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 119289 |||||| | | ||||| || ||||| || || |||||| || ||| | | Sbjct 30705 ACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTTAGATCCAC 30646 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 | || ||| || ||||||||||| || || |||| ||||| || || | Sbjct 30645 GAATATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGCACAATTTT 30586 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 | ||| || | || || || || || ||||| | || | | ||||| || ||| | Sbjct 30585 TAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAAACAGGATG 30526 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 |||||||||| | | |||||||| || || || |||||||| || || || | || Sbjct 30525 ACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGTGTA-ATGT 30467 Query 119470 CTTG-GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 | | |||||| | || || || ||||| || ||||| | ||| ||| ||||| Sbjct 30466 TTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATATTATCCTTGTGTATACCA 30407 Query 119529 ATCGAGACCCGCATAAACATGTATTGGGG 119557 | | ||| ||||| | ||||| ||| || Sbjct 30406 ACTGCGACACGCATGAGCATGTGTTGAGG 30378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618386992976160