Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq458 176 5e-39 seq352 104 3e-17 >seq458 Length=35501 Score = 176 bits (194), Expect = 5e-39 Identities = 654/1009 (65%), Gaps = 21/1009 (2%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || || | ||||| || ||| | ||| || ||||| | Sbjct 30385 ACATGCTCATGCGTGTCGCAGTTGGTATACACAAGGATAATATTCCAAAAGTTTTGGAAA 30444 Query 104289 CATACGACAAGATGTCC-CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 | || || | |||||| | | || | || || |||||||||||||| || |||||| Sbjct 30445 CGTATGAAATGATGTCAACTAAACAT-TACACACATGCAACACCAACCCTATTTAATGCT 30503 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 ||||| | | | || |||||||| || || || || | | || || ||||| || Sbjct 30504 GGTACTCGACGCCCTCAAATGTCATCCTGTTTTCTCATGACTATGAAAGAAGACTCTATT 30563 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467 | || || |||| ||||||| | ||||| ||||| |||| ||||| |||||| Sbjct 30564 GAAGGAATTTATGACACTCTTAAAAATTGTGCATGCATCTCGAAGTATGCTGGTGGTATT 30623 Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 104527 || || || || || | | | ||| || |||||| || || |||||| Sbjct 30624 GGTATTTCAATTCACAATATTCGTGGATCTAACTCCTATATTCGTGGAACCAATGGTTCT 30683 Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587 ||| ||||| || | |||||| | | || ||||| | || || || || || ||||| Sbjct 30684 TCAAATGGTCTTGTACCAATGTTGAGAGTTTTTAATGATACTGCTCGTTACGTTGATCAA 30743 Query 104588 GCTGGGCG---TCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 | || | ||||| |||||| |||| || ||||| || || ||||| ||||| Sbjct 30744 GGGGGAGGAAAACGAAAAGGATCTTTCGCTGTTTATCTCGAACCTTGGCATTGTGATATT 30803 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCT 104703 | || |||||| | || || || ||| | || || |||| |||| | ||||| Sbjct 30804 CTTGAATTCCTTCAACTGAAAAAGAATCATGGTAAAGAAGAAGCGC-GTGCAAGAGATCT 30862 Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763 ||| | | || ||| |||| ||| | |||||| | | ||| | ||| | |||| Sbjct 30863 CTTTTATGGACTTTGGGTTCCTGATTTATTCATGGAACGCGTTCAAAAGAATCAAGATTG 30922 Query 104764 GTCTCTCTTTTGTCCAGA-CAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTT 104821 | |||||| || ||| | || || || |||||| | || || | | | || || ||| Sbjct 30923 GAGTCTCTTCTGCCCAAATGAATGC-CCAGGTCTCGCTGATTGTCATTCG-GAAGAATTT 30980 Query 104822 GAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCC 104881 | ||| ||||| || || ||||| | ||| || | | ||| || |||| Sbjct 30981 GTAGCTCTTTATACTAAATACGAAAACTCAGGCAAAGCTCGTACAACGATGAAAGCTCAA 31040 Query 104882 GATGTGTGG----AAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCT 104937 | | ||| ||| ||| | ||||||| | ||| || || || || || ||| Sbjct 31041 AAACTTTGGTTTCAAA--TAT--TGGAGTCTCAGATCGAAACCGGAACTCCCTATATGTG 31096 Query 104938 TTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTC 104997 || |||||| || ||||| || ||| ||||| ||| | || ||||| || Sbjct 31097 TTTCAAAGATGCTTGTAATAGCAAATCTAACCAAAAAAATCTTGGAACTATCAAATCGTC 31156 Query 104998 CAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCT 105057 ||||| ||||| || || |||||| ||| |||||| | ||||| ||||| || Sbjct 31157 AAATCTTTGTACTGAGATTATGGAATATACTTCACCAGATGAAATTGCTGTCTGTAATCT 31216 Query 105058 CGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAA 105117 || || ||| ||| |||||| ||| ||| | | | |||| ||| | ||| || Sbjct 31217 TGCGTCTATCAATCTTTCCAAGTTTGTTGATGCTAAAAATCGAACATATGACTTTGAGAA 31276 Query 105118 ACTCCACGAAGT-TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATT 105176 |||| | | || | |||| ||| | | || |||| ||| |||||| || | Sbjct 31277 ACTCGTCAAGGTGTCTGAAATGTGT-GCATATAATTTAAATCAAGTCATTGATTTGAACT 31335 Query 105177 TTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 || || ||||| |||||||| || || ||| | || || ||||| Sbjct 31336 ACTATCCAGTTGAAGAAGCTCGTAATTCAAACATGCGTCATCGACCAAT 31384 >seq352 Length=10598 Score = 104 bits (114), Expect = 3e-17 Identities = 285/434 (66%), Gaps = 2/434 (0%) Strand=Plus/Minus Query 94523 ACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACT 94582 |||| || || |||||||||| | ||||||||||| || || | | ||| | Sbjct 7520 ACATTCTCGCGTTCTTTGCTGCAAGTGATGGAATTGTAAACGAAAACTTGGCAACCAATT 7461 Query 94583 TTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAATG 94642 | || || |||||| |||||||| ||| ||| |||| | ||| | || || Sbjct 7460 TCATGGAAGACATGCAATGTGCTGAAGCGCGATGCTTTTATGGTTTTCAAATTGCTATTG 7401 Query 94643 AAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTG 94702 ||| | ||| ||| || | || || |||| || |||| || || | Sbjct 7400 AAAACATTCATTCGGAAGTGTATTCTCTTCTTATTGACACGTTAATTACTGAGAAAGCCG 7341 Query 94703 AGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATT 94762 |||| || || | || | || ||| |||| || || || || || |||| || | | Sbjct 7340 AGAAAAATCACTTGTTAAACGCAATCGAAACTGTCCCTTGCGTTAAAGAGAAGGCTGCAT 7281 Query 94763 GGGCTATGAAGTGGTTTGATACAAAGT-CGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821 ||||| | | ||| ||| | | | | ||||| | |||||||| ||||| | || || Sbjct 7280 GGGCTCTTCAATGGACTGACAAACAATACGCGT-CTTTTGCTGAACGACTTGTAGCGTTC 7222 Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || ||| || || || |||||||||||||| || ||| ||||| |||| | || || Sbjct 7221 GCTGCTGTAGAAGGAATTTTCTTCTCTGGTTCATTTTGCAGTATTTTTTGGTTAAAAAAA 7162 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 |||||| | |||||||| ||| ||||| || || | || || || || || || | Sbjct 7161 CGAGGTTTGATGCCAGGACTCACTTTCTCGAATGAATTAATTTCACGCGATGAAGGTTTA 7102 Query 94942 CACCAAGAGTTTGC 94955 ||| || ||||| Sbjct 7101 CACTGCGACTTTGC 7088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583215334820640