Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq99 118 5e-22 >seq99 Length=19583 Score = 118 bits (130), Expect = 5e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| |||||| ||| ||||||||||||||| || || |||| ||| || Sbjct 6657 CGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATTATTCGACCCAACAAAGTTT 6598 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 |||||||| | | ||| | | | | ||| ||||||| |||||||| | |||||| Sbjct 6597 TGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACCATGATGATAAGCAGAATGT 6538 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 || |||||||| ||| |||||||||||||| ||||| Sbjct 6537 TCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTC 6500 Score = 118 bits (130), Expect = 5e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| ||||| |||||| ||| ||||||||||||||| || || |||| ||| || Sbjct 12904 CGTGTACCAAATTGACCACCTGGGTATAATAAATTAATATTATTCGACCCAACAAAGTTT 12963 Query 65147 TGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGT 65206 |||||||| | | ||| | | | | ||| ||||||| |||||||| | |||||| Sbjct 12964 TGAGCCATACTCACAATAGTTCCTTGTAAGGAAACTTCACCATGATGATAAGCAGAATGT 13023 Query 65207 TCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 || |||||||| ||| |||||||||||||| ||||| Sbjct 13024 TCTGAGACATAACCAGCTAATTGAGCAACTTTAATTTC 13061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235662088025400