Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq446 147 2e-30 seq458 102 9e-17 seq352 87.8 2e-12 >seq446 Length=43508 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| || || || || || || ||||| || || || | Sbjct 20606 AATGCAGATATTTGTCAAGACCCTCACAGGTAAAACCATCACTCTCGATGTCGAACCTTC 20665 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| ||||| || || ||||||||||| ||||||||||| ||||| Sbjct 20666 CGACACTATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCA 20725 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || |||||||| || ||||| |||| || || || | ||||| || Sbjct 20726 GCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAAGATGGCCGCACTCTCTCGGACTACAA 20785 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| ||||| | || || || | || ||||| |||||| Sbjct 20786 CATCCAAAAGGAGTCCACCTTGCACCTTGTTCTCCGCCTTCGTGGTGGA 20834 >seq458 Length=35501 Score = 102 bits (112), Expect = 9e-17 Identities = 276/415 (67%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 81336 ATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGGCCACCC---TGGTTGAC 81392 |||||| || || ||||| || |||| || || || || || ||| || | || Sbjct 30794 ATGCCAAGGTTCGAGATAAACAGCGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAAC 30735 Query 81393 GTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTT 81452 |||||| ||||| | ||||| || | |||||| || | | ||||| ||| ||| || Sbjct 30734 GTAACGAGCAGTATCATTAAAAACTCTCAACATTGGTACAAGACCATTTGAAGAACCATT 30675 Query 81453 CGTACCCACGA-TACGCGACCCCTTGG---CGCGCACCTTGCTGATTGAAAGACCGATGC 81508 || || |||| || || || | | || | ||| ||||||| ||| || | Sbjct 30674 GGTTCC-ACGAATATAGGAG---TTAGATCCACGAATATTGTGAATTGAAATACCAATAC 30619 Query 81509 CACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGC 81568 |||| | |||| || || ||||| || | || ||||||||||| || || Sbjct 30618 CACCAGCATACTTCGAGATGCATGCACAATTTTTAAGAGTGTCATAAATTCCTTCAATAG 30559 Query 81569 TATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCA 81627 |||| |||||| |||| | | |||||| |||||| ||||||| | | || ||| Sbjct 30558 AGTCTTCTTTCATAGTCATG-AGAAAACAGGATGACATTTGAGGGCGTCGAGTACCAGCA 30500 Query 81628 TTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCC 81687 || || || ||||| || || || || ||| ||||||||| ||||| |||||| Sbjct 30499 TTAAATAGGGTTGGTGTTGCATGTGTGTAATGTTTAGTTGACATCATTTCATACGTTTCC 30440 Query 81688 TTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 || |||||||| || ||| ||||| | || |||||||| | ||||| Sbjct 30439 AAAACTTTTGGAATATTATCCTTGTGTATACCAACTGCGACACGCATGAGCATGT 30385 >seq352 Length=10598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 64703 CGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGT 64762 |||| |||| | | || || | ||| || || ||| |||||||||||||| ||||| | Sbjct 7250 CGTCTTTTGCTGAACGACTTGTAGCGTTCGCTGCTGTAGAAGGAATTTTCTTCTCTGGTT 7191 Query 64763 CATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGA 64822 |||| || |||||| ||| ||||||| || || |||||||||| || | || |||| Sbjct 7190 CATTTTGCAGTATTTTTTGGTTAAAAAAACGAGGTTTGATGCCAGGACTCACTTTCTCGA 7131 Query 64823 ACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 | || | || || || || || || | ||| || ||||| Sbjct 7130 ATGAATTAATTTCACGCGATGAAGGTTTACACTGCGACTTTGC 7088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265944304320