Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq352 190 2e-43 >seq352 Length=10598 Score = 190 bits (210), Expect = 2e-43 Identities = 574/872 (66%), Gaps = 12/872 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || || ||||| || || || ||||| |||| ||| |||||| | ||| | ||||| Sbjct 6809 ACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGATTCATCCATTCAAAT 6868 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA-GCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | || ||| ||| |||||| || | || | | || ||||| || Sbjct 6869 GGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAAGA-CGATCAGC-AC 6926 Query 4391 A-AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 | ||||| || || |||| ||| | | | || |||||||| | | || |||| | Sbjct 6927 AGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTTCTACTGGTAAAG 6986 Query 4450 CGTATGTCAAAAA-CTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 | | | | ||| ||||| |||| | || ||| | || || || | | | Sbjct 6987 CATCACTGACAAATCTCTT-TTCTTGATCAACAGCTGATACAATGATCTCGGTAACACGA 7045 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAA 4568 ||| | |||||||||| | | | ||| | ||| ||||| || || || ||| Sbjct 7046 GATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACATGCAAAGTCGCAGTGTAAA 7105 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| || | ||| | ||| || || || || | ||| ||||| ||||||| ||| Sbjct 7106 CCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGGCATCAAACCTCGTTTT 7165 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || | |||||| ||| | |||||| ||||| ||||| || |||||||| || || ||| Sbjct 7166 TTTAACCAAAAAATACTGCAAAATGAACCAGAGAAGAAAATTCCTTCTACAGCAGCGAAC 7225 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAA-TCCATTTTAATGCCCAGTT 4747 ||||| | ||| | || || | | |||| | | | |||||| | ||||| Sbjct 7226 GCTACAAGTCGTTCAGCAAAAGA-CGCGTATTGTTTGTCAGTCCATTGAAGAGCCCATGC 7284 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 ||| || | |||||||| || | || | || ||||| || || | | |||| || Sbjct 7285 AGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACAAGTGATTTTTCTCGGC 7344 Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 | || ||| | ||||| || || || ||||| ||| ||||| || ||||| || Sbjct 7345 TTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTTCCGAATGAATGTTTTCAAT 7404 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA--AAAT 4925 |||||| ||||| || |||||||||| ||||| | ||| | || || || |||| Sbjct 7405 AGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATTGCATGTC-TTCCATGAAAT 7463 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | | | |||||||||||||| || || ||||| || ||||| ||||| | || ||| Sbjct 7464 TGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGCAAAGAACGCGAGAATGTGA 7522 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || || |||| ||||||| | ||||||| ||| || | | | Sbjct 7523 GAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTCCCTTGTGTCACTCGCAAGG 7582 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 || | |||||| | |||||||| || || || ||||| || ||||| |||||| ||| Sbjct 7583 TCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATACATTTCCCAAATGTCA 7642 Query 5106 GGATACTGAATCGGAAGTATGACAAATCTGTT 5137 | || || |||| | ||||||| ||| Sbjct 7643 GAATGAACGATTGGAAAGAGAACAAATCGGTT 7674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427017143696588