Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq352 244 1e-59 seq458 192 8e-44 >seq352 Length=10598 Score = 244 bits (270), Expect = 1e-59 Identities = 633/948 (67%), Gaps = 30/948 (3%) Strand=Plus/Plus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAGACAT---AACTCCCATTT 47850 ||||||||||| |||||||||||| || ||||| || | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | ||| ||||| |||||||| || ||||| || ||||| |||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 ||| | ||||||||||| | |||||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | | ||| ||| |||||| || ||| ||| | | | |||||||||| ||||||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAA-CTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 ||||||| ||| || | | ||| ||||| ||| | ||||| || || ||| Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTT-TTCTTGATCAACAGCTGATACAATGATC 7033 Query 48090 GATGTTAC-CG---TTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 || || || ||| | || | ||||| || ||| ||| | |||||| Sbjct 7034 TCGGTAACACGAGATTTTGGAAGTTTATT--TACAAGC--TGGTTATACACGAGACATGC 7089 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| || || || | ||||||||| | ||||||||| || || || ||||| || || Sbjct 7090 AAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCCTGG 7149 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAA-GATCCAGAAAAGAATATGC 48264 ||| | || |||||||| | |||||| || | || ||| || ||||| ||||| || | Sbjct 7150 CATCAAACCTCGTTTTTTTAACCAAAAAATA-CTGCAAAATGAACCAGAGAAGAAAATTC 7208 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCC 48321 ||||||| || || || || ||||| || | || || || |||| ||| Sbjct 7209 CTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTCAGTCC 7268 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | | | ||||| ||||||||| || || ||||| | ||||| || || || || | Sbjct 7269 ATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTAACA 7328 Query 48382 GAAAGtt-tttttCATTGCTATCTT--TAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||| |||||| ||| ||| ||| | || || || | |||| ||||| || Sbjct 7329 ---AGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTT 7385 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | || ||||| |||||||| || || ||||| || ||||| |||| |||||| | | Sbjct 7386 CCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATT 7445 Query 48499 GTA---CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 | | | ||| | ||| | ||| ||||| || || ||||| ||||||||||| |||| Sbjct 7446 GCATGTCTTCCATG-AAATTGGTT--GCCAAGTTTTCGTTTACAATTCCATCACTTGCAG 7502 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 |||| || || | | || ||| || | ||||| || | ||||| | ||| Sbjct 7503 CAAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGT 7562 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 | | | || | | | || | |||||||| |||||||| || ||||| ||||| | Sbjct 7563 CCCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCT 7622 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATC 48723 ||||||| | ||| || ||| | |||||| || | |||||||| Sbjct 7623 TATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 192 bits (212), Expect = 8e-44 Identities = 518/780 (66%), Gaps = 18/780 (2%) Strand=Plus/Minus Query 77663 AACAAACATGTTCAAAGCT--ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 ||||||| || |||| | ||||| || |||||||| || || | |||| | Sbjct 31244 AACAAACTTGG--AAAGATTGATAGACGCAAGATTACAGACAGCAATTTCATCTGGTGAA 31187 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||||| || ||||| ||||| ||||| |||||||||| || ||||||| |||| Sbjct 31186 GTATATTCCATAATCTCAGTACAAAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGG 31127 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || || |||| || | || || || ||| | ||||| |||||||| ||||| Sbjct 31126 TTAGATTTGCTATTACAAGCATCTTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGA 31067 Query 77841 GATTCGA-TAATAGATTTCCAGACGACTCTAGCTTTTATCATAG-ATTTGTATCGCCTCT 77898 || || | || | || ||| | | |||||| ||| | | | | | |||| Sbjct 31066 GACTCCAATATTTGAAA-CCAAAGTTTTTGAGCTTTCATCGTTGTACGAGCTTTGCCTGA 31008 Query 77899 CTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAA--ACA-TCATCCAATC 77955 | |||| |||| |||||| || | ||||||| || | || ||| ||| | | | Sbjct 31007 GT-TTTCGTATTTAGTATAAAGAGCTACAAATTCTTC---CGAATGACAATCAGCGAGAC 30952 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 | ||||||||||||||||| | | ||| || || | | ||| |||| ||| | Sbjct 30951 CTGGGCATTCATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGA 30892 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | | |||||| | ||| || || ||| ||||||| | | |||||| || || Sbjct 30891 ATAAATCAGGAACCCAAAGTCCATAAAAGAGATCTCTTGCACGCGCTTCTTCTTTACCAT 30832 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 ||||||||| || | || || || | ||||||| ||||||| ||||| ||||| | | Sbjct 30831 GATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAG 30772 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | ||| |||||| || || ||||| | || | || || | |||| ||| Sbjct 30771 CGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAA 30712 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA--ACTTCC 78253 ||||||||||||| | || ||| || || | ||||| |||||| |||||| | || Sbjct 30711 CTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTT-- 30654 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | |||||||| ||| || || || || || || || ||| || || || Sbjct 30653 AGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGC 30594 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| ||| | || || || || || || ||| ||| || |||| | | ||||| Sbjct 30593 ACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAA 30534 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 |||| ||||||||| | | ||| || |||||||||| || || | |||||| || Sbjct 30533 ACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGT 30474 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 77129 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 77188 |||||| |||| | |||||||| | |||||||| || |||||||| | | |||| Sbjct 31879 AAATTCACCAGCAAGAACTCTACGTGAATAAATATTTGAAGTGTATGGTTCGAAACATTC 31820 Query 77189 ATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||| |||||||| ||||||| ||||||||| ||||||||||| || Sbjct 31819 ATTATTTCCCAATATTTGAGAAGTAGAAGCTGTTGGCATAGGAGC 31775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694614650567040