Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 6_20[genbank_20GCA_5F900128565.1_202016-12-02] 6,236 sequences; 21,121,382 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq352 219 6e-52 seq458 181 2e-40 >seq352 Length=10598 Score = 219 bits (242), Expect = 6e-52 Identities = 626/947 (66%), Gaps = 28/947 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGTGACAT---AACTCCCATTT 46339 |||||||||| |||||||||||| || ||||| | | |||||| || Sbjct 6735 TTTAAAAGTCACAATCTAAAGAAAATAAGTTCTCTTCCGCAGCAACTCCAACTCCAGCTT 6794 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || ||||| |||||||| || ||||| || ||||| |||| || || ||| | Sbjct 6795 TAGAATACTCACCAACACGTTTTTCAAAAAAGTTTGTTTTTCCTTGTAAAGAAATAAGAT 6854 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||| | ||||| ||||| | |||||||| ||| | | | || | | | || | Sbjct 6855 TCATCCATTCAAATGGATTTTTCGTATTATAAACTTTATCACACCCAAGCTGGTAGATAA 6914 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | | ||| ||| |||||| || || ||| | | | |||||||||| || |||| Sbjct 6915 GACGATCAGCACAGAATTCAATGTATTGGCACATTAATGTAGAATTCATTCCAATAAGTT 6974 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAA-CTCTTGTTCAATAGTGA-CAGCATCCGATATTAT 46577 || |||| ||| || | | ||| ||||| ||| ||| || || | |||| || Sbjct 6975 CTACTGGTAAAGCATCACTGACAAATCTCTT-TTCT----TGATCAACAGCTGATACAAT 7029 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCAT-----CAAA-TGTTTAAACATTAAACA 46631 ||| | | || | | | |||| | | ||| || ||| ||| | ||| Sbjct 7030 -GATCT--CGGTAACACGAGATTTTGGAAGTTTATTTACAAGCTGGTTATACACGAGACA 7086 Query 46632 TGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCC 46691 |||||| || || || | |||||||| | ||||||||| || || || ||||| || Sbjct 7087 TGCAAAGTCGCAGTGTAAACCTTCATCGCGTGAAATTAATTCATTCGAGAAAGTGAGTCC 7146 Query 46692 AGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAA-GATCCAGAAAAGAATA 46750 ||||| | || || ||||| | |||||| ||| | || ||| || ||||| ||||| | Sbjct 7147 TGGCATCAAACCTCGTTTTTTTAACCAAAAAATA-CTGCAAAATGAACCAGAGAAGAAAA 7205 Query 46751 TGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAA 46807 | ||||||||||| ||||| || ||||||| || | || || | || | | Sbjct 7206 TTCCTTCTACAGCAGCGAACGCTACAAGTCGTTCAGCAAAAGACGCGTATTGTTTGTCAG 7265 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 |||| ||||||| ||||||| | || || ||||| | ||||| || || || | Sbjct 7266 TCCATTGAAGAGCCCATGCAGCCTTCTCTTTAACGCAAGGGACAGTTTCGATTGCGTTTA 7325 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 | | ||||| || | | || ||| | || || || | |||| ||||| || Sbjct 7326 ACAAGTGATTTTTCTCGGCTTTCTCAGTAATTAACGTGTCAATAAGAAGAGAATACACTT 7385 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | |||||||||||||||||||| || ||||| || ||||| |||| ||||||| | | Sbjct 7386 CCGAATGAATGTTTTCAATAGCAATTTGAAAACCATAAAAGCATCGCGCTTCAGCACATT 7445 Query 46988 GTACCTCTGTACA--AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 | | ||| | || |||| | | | ||| || || || || ||||||||||| ||||| Sbjct 7446 GCATGTCT-TCCATGAAATTGGT-TGCCAAGTTTTCGTTTACAATTCCATCACTTGCAGC 7503 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| || || | | || ||| || | ||| || | | ||||| | |||| Sbjct 7504 AAAGAACGCGAGAATGTGAGAAATGAAGTGACGTTCGTCCGATGAGAGTTTTTCGTAGTC 7563 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 | | || | | | || | |||||||| ||||| || || ||||| ||||| || Sbjct 7564 CCTTGTGTCACTCGCAAGGTCGAGCTCTTCAGCCGTCCAAAAGGAGGCCTCAGCTTTCTT 7623 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATC 47212 |||||| | ||| || ||| || ||| ||||| | |||||||| Sbjct 7624 ATACATTTCCCAAATGTCAGAATGAACGATTGGAAAGAGAACAAATC 7670 >seq458 Length=35501 Score = 181 bits (200), Expect = 2e-40 Identities = 581/887 (66%), Gaps = 22/887 (2%) Strand=Plus/Minus Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 |||||| | |||| ||||| || |||||||| || || | |||| | | | Sbjct 31243 ACAAACTTGGAAAGATTGATAGACGCAAGATTACAGACAGCAATTTCATCTGGTGAAGTA 31184 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 |||| || ||||| || || ||||| | ||||||||||||||||||| |||||| Sbjct 31183 TATTCCATAATCTCAGTACAAAGATTTGACGATTTGATAGTTCCAAGATTTTTTTGGTTA 31124 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 || | ||||| | || || || | | | |||||||| ||||| ||||| || Sbjct 31123 GATTTGCTATTACAAGCATCTTTGAAACACATATAGGGAGTTCCGGTTTCGATCTGAGAC 31064 Query 76439 TCGA-TAATAGATTTCCAGACGACTCTAGCTTTTATTATAG-ATTTGTATCGCTTCTCTC 76496 || | || | || ||| | | |||||| || | | | | | || | | Sbjct 31063 TCCAATATTTGAAA-CCAAAGTTTTTGAGCTTTCATCGTTGTACGAGCTTTGCCTGAGT- 31006 Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAA--ACA-TCATCCAAACCAG 76553 |||| |||| ||||| | | ||||||| || | || ||| ||| | | ||| | Sbjct 31005 TTTCGTATTTAGTATAAAGAGCTACAAATTCTTC---CGAATGACAATCAGCGAGACCTG 30949 Query 76554 GACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGA 76613 | |||||||| || || | | ||| || || | | ||| |||| ||| || | Sbjct 30948 GGCATTCATTTGGGCAGAAGAGACTCCAATCTTGATTCTTTTGAACGCGTTCCATGAATA 30889 Query 76614 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG---TTCTTCATTTCCTG 76670 |||||| | ||| || || ||| ||||||| || ||| |||||| || || Sbjct 30888 AATCAGGAACCCAAAGTCCATAAAAGAGATCTC---TTGCACGCGCTTCTTCTTTACCAT 30832 Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 ||||||||| || | ||||| || | ||||||| ||||||| ||||| ||||| | | Sbjct 30831 GATTCTTTTTCAGTTGAAGGAATTCAAGAATATCACAATGCCAAGGTTCGAGATAAACAG 30772 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | | || |||||| || || ||||| | || | ||||| | |||| ||| Sbjct 30771 CGAAAGATCCTTTTCGTTTTCCTCCCCCTTGATCAACGTAACGAGCAGTATCATTAAAAA 30712 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTCC 76848 ||||||||||||| | || || || || | |||||| |||||| |||||| | || Sbjct 30711 CTCTCAACATTGGTACAAGACCATTTGAAGAACCATTGGTTCCACGAATATAGGAGTT-- 30654 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 | || |||||||||| ||| || | || || || || || || ||||| || Sbjct 30653 AGATCCACGAATATTGTGAATTGAAATACCAATACCACCAGCATACTTCGAGATGCATGC 30594 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 ||| ||| | |||||||| || || || ||| || || |||| | | ||||| Sbjct 30593 ACAATTTTTAAGAGTGTCATAAATTCCTTCAATAGAGTCTTCTTTCATAGTCATGAGAAA 30534 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 |||| ||||||||| | | ||| || |||||||| | || || | |||||| || Sbjct 30533 ACAGGATGACATTTGAGGGCGTCGAGTACCAGCATTAAATAGGGTTGGTGTTGCATGTGT 30474 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA-TCCCATTGAT 77087 | | ||| || | | | || ||||| | |||| | ||| | | ||| | Sbjct 30473 GTAATGTTTAGTTGACATCATTTCATACGTTTCCAAAACTTTTGGAATATTATCCTTG-T 30415 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 | || || || ||||||||||| | ||| || ||||| || || ||| Sbjct 30414 GTATACCAACTGCGACACGCATGAGCATGTGTTGAGGACGCTCAACA 30368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712878826763520