Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq537 93.3 9e-14 seq536 93.3 9e-14 >seq537 Length=27904 Score = 93.3 bits (102), Expect = 9e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||||||||| | || | ||| ||||||||| || || | | |||||||| Sbjct 22311 TCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAGA 22370 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || | || || |||||||| || || ||||| || ||||||| ||| |||||||||| Sbjct 22371 TGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATGC 22430 Query 319111 TTCCAAACACTA-CCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 || ||| | |||| |||||| ||||| ||| || || | ||| || | ||| || Sbjct 22431 TTTTTTACAAGACCCGAGCATGGCTT-CATTTCTCCAGTAAGAAGCTTGATCATGGTACT 22489 Query 319170 TTTCCCCGCACCGTT 319184 || || || || || Sbjct 22490 CTTTCCAGCTCCATT 22504 >seq536 Length=27921 Score = 93.3 bits (102), Expect = 9e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 318991 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 319050 || ||||||||||| | || | ||| ||||||||| || || | | |||||||| Sbjct 5611 TCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAGA 5552 Query 319051 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 319110 || | || || |||||||| || || ||||| || ||||||| ||| |||||||||| Sbjct 5551 TGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATGC 5492 Query 319111 TTCCAAACACTA-CCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 || ||| | |||| |||||| ||||| ||| || || | ||| || | ||| || Sbjct 5491 TTTTTTACAAGACCCGAGCATGGCTT-CATTTCTCCAGTAAGAAGCTTGATCATGGTACT 5433 Query 319170 TTTCCCCGCACCGTT 319184 || || || || || Sbjct 5432 CTTTCCAGCTCCATT 5418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057701735049230