Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1156 105 7e-18 >seq1156 Length=16538 Score = 105 bits (116), Expect = 7e-18 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| ||||| || || ||||| || | |||||| |||| || ||||| | || Sbjct 3495 TTCATGTATCGAATTTTCCCGAAAACTGGTCGTTCCCTCCAACCTTGATCGTGCAAACCT 3436 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 || | |||||| |||||| | || || || || ||| || |||| ||||| Sbjct 3435 GCAATAGCCCATGCGCATCCAGCATAACCATTCGGGTCCCGGCCGTCTAGGCTATATTTG 3376 Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 || || | ||| || ||| | || ||||| ||| || | || ||| ||||| || Sbjct 3375 TCATTCAGGTAAATTGCAGTCTCT-AACGCTTCTTCGGGCGACTTCGACCACTCCAGAAT 3317 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 |||||||||||| ||||| || | | ||||||||||| || | | ||||||| | Sbjct 3316 TTTTTTAGCCCAATACATCCGCATAAAACCATGCATTTTGCCAAAATGTACCATTTCCAT 3257 Query 120022 TTGTGCGGCGTTCCATAAGGGATCGTGTGT 120051 |||||| |||||||| || | ||||| || Sbjct 3256 TTGTGCTGCGTTCCACAACTGTTCGTGCGT 3227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517487240264280