Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7946 123 3e-23 >seq7946 Length=2495 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || | || || |||||||||||| | ||||| ||| | | | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | ||| |||| || | ||||| || ||||| || | || || Sbjct 262 GATACCATCGAAAACG-TGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 320 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||| | |||| || || || || |||| |||| |||||| | ||||||||| Sbjct 321 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAA 380 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||||| || |||| |||| Sbjct 381 TATCCAAAAGGAGGCAACCTTGCACTTAGT 410 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || |||||||||||| | ||||| ||| | | ||| | | | | ||||| | ||| |||| Sbjct 1 GGTAAAACCATCACCCTTGACGTAGAACCAAGCGATACCATCGAAAACG-TGAAGCAAAA 59 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| || ||||| || | || ||||||||| | |||| || || || || Sbjct 60 GATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGAAAGCA 119 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||| |||| |||||| | ||||||||| ||||| |||||||| || |||| | Sbjct 120 ATTGGAAGACGGGCGCACATTGTCCGACTACAATATCCAAAAGGAGGCAACCTTGCACTT 179 Query 40896 AGTGTTGCGCTT 40907 ||| | ||||| Sbjct 180 AGTCCTTCGCTT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515161102594960