Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1156 113 7e-20 seq1170 111 2e-19 >seq1156 Length=16538 Score = 113 bits (124), Expect = 7e-20 Identities = 202/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 |||| |||||| || |||| || | | | |||| |||| |||||| || || | |||| Sbjct 3525 ACATTAAATTTTCGCTTACAACCAGCGTGATTCATGTATCGAATTTTCCCGAAAACTGGT 3466 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 | ||| |||| || ||| || | ||| ||| | ||| |||||| |||| ||| Sbjct 3465 CGTTCCCTCCAACCTTGATCGTGCAAACCTGCAATAGCCCATGCGCATCCAGCATAACCA 3406 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT 202939 || || || || || |||| |||||| ||||| | | || ||| Sbjct 3405 TTCGGGTCCCGGCCGTCTAGGCTATATTTGTCATTCAGGTAAATTGCAGTCTCTAACGCT 3346 Query 202940 TCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCA 202999 ||||| || || || | ||| || | |||||||||||||||||||| | | | | ||| Sbjct 3345 TCTTCGGGCGACTTCGACCACTCCAGAATTTTTTTAGCCCAATACATCCGCATAAAACCA 3286 Query 203000 TGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATGAGTT 203059 |||||||| ||| | | ||||| |||||| ||| ||||| || | || || ||| Sbjct 3285 TGCATTTTGCCAAAATGTACCATTTCCATTTGTGCTGCGTTCCACAACTGTTCGTGCGTT 3226 >seq1170 Length=16159 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124625 AATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACA 124684 ||||||||| |||||||| || || || |||||||||||| | || || || || ||||| Sbjct 6859 AATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTGATATTCGCGGGCAAACA 6800 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 || || ||| | || || | ||||| || |||||||||||||||||||| ||||| Sbjct 6799 GTTGGAAGATGGGCGTACTCTGTCGGATTACAACATTCAAAAAGAATCAACTTTACATTT 6740 Query 124745 GGTTTTACGTTTACGAGGTGG 124765 ||| || | ||||| || || Sbjct 6739 AGTTCTAAGGTTACGCGGCGG 6719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755370812892800