Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1156 87.8 3e-12 >seq1156 Length=16538 Score = 87.8 bits (96), Expect = 3e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 189452 TGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATG 189511 |||||||| |||||||| | ||||| || ||||||||| ||||| | || ||| Sbjct 3242 TGGAACGCAGCACAAATGGAAATGGTACATTTTGGCAAAATGCATGGTTTTATGCGGATG 3301 Query 189512 TATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGC-TTTGAGTTATAG 189570 ||||||||||| || || || || ||| | | | || ||||| || || ||| | Sbjct 3302 TATTGGGCTAAAAAAATTCTGGAGTGGTCGAAGTCGCCCGAAGAAGCGTTAGAG-ACTGC 3360 Query 189571 TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTG 189630 || || |||| |||| || ||||||||| ||| || || || || | || || Sbjct 3361 AATTTACCTGAATGACAAATATAGCCTAGACGGCCGGGACCCGAATGGTTATGCTGGATG 3420 Query 189631 TATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGGAAA 189690 ||| ||||| || || |||||| || |||| ||| |||| | || || || Sbjct 3421 CGCATGGGCTATTGCAGGTTTGCACGATCAAGGTTGGAGGGAACGACCAGTTTTCGGGAA 3480 Query 189691 GATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 || |||| |||||| | | ||| |||| |||||| |||| Sbjct 3481 AATTCGATACATGAATCACGCTGGTTGTAAGCGAAAATTTAATGT 3525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923092698020840