Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6149 149 1e-30 >seq6149 Length=3715 Score = 149 bits (164), Expect = 1e-30 Identities = 411/624 (66%), Gaps = 21/624 (3%) Strand=Plus/Minus Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 |||||||||| | || || | ||||| ||||| ||||| ||||| ||| || Sbjct 1898 ATTGACTACGCCCGCGACTTTTCTTTCGATTACTTTGGCTTCAAGACGCTTGAGCGCGCG 1839 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 ||| | | ||||| | || | |||||||| || ||||||||| | ||||| || Sbjct 1838 TATTTGTTGAAAATCAACGGGGAAATCGTGGAGCGCCCACAGCACATGATCATGCGTGTC 1779 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 | |||| |||||||| || ||||| ||||||| || || ||| | ||||| Sbjct 1778 TCCATCGGCATTCACAAAGAGGACATCGAGAGCGCCATCCGTACCTACGACTTGATGAGC 1719 Query 248974 GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAA 249029 || | | || || || ||||| ||| | |||||||||||||| || | |||| Sbjct 1718 AAAATGATGTTCACTCACGCTACACCAACGTTGTTCAACGCCGGTACCCCGCGCCCACAA 1659 Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 | || ||||||||| ||| || ||||| | || ||||| ||||||| ||||| || Sbjct 1658 T----TGGCCTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGTATTTACGA 1603 Query 249090 CACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146 ||| ||| | || || || || || | || || || ||||| || || Sbjct 1602 CAC-CTTGA--AGTCGTGCGCTTGCATAAGCAAGTATGCTGGTGGCATCGGCCTTAGTGT 1546 Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTAT 249206 | ||||||||| | ||| ||||| || || || || || | || || Sbjct 1545 CCACAACATCCGTAGTACTGGTAGCTACATTCGTGGCACGAACGGATCAAGCAACGGCAT 1486 Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA---GGCCGGGCG 249263 |||||| | || || ||| | |||||| | | | | |||| || ||| Sbjct 1485 CGTACCTATGCTAAGAGTCTTCAATGACACCGCACGCTACGTAGACCAAGGGGGCGGCAA 1426 Query 249264 CCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCT 249323 || || ||||| |||||||| || |||||| ||||| | || | || || ||| | Sbjct 1425 ACGCAAAGGGTCTTTCGCCATTTACTTGGAACCATGGCATTCGGACGTCTTCGAATTCTT 1366 Query 249324 GGACTTGAAAAAGAACAACGGCAACGAGCTCATG--AGAGCGCGTGACCTCTTCTACGGC 249381 ||| ||||| || ||| | || |||| ||| | ||||||||| | ||||||| | Sbjct 1365 GGATTTGAAGAAAAACCATGGGGACGA--AAATGCCCGCGCGCGTGACTTGTTCTACGCC 1308 Query 249382 CTGTGGGTCTCCGACTTGTTCATG 249405 ||||| | |||||||||||||| Sbjct 1307 ATGTGGATACCCGACTTGTTCATG 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073642292401728