Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7946 89.7 4e-13 >seq7946 Length=2495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||||| || |||||| || || ||||||||| || | ||| |||| ||| Sbjct 410 ACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCC 351 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||| || || ||||| || || || || ||||| | || |||||||| Sbjct 350 AATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGG 291 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || |||||||| || | | | | || | || || || | ||| || || || Sbjct 290 ATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTA 231 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || ||||||||||| Sbjct 230 CCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395031764074441