Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6149 154 1e-32 seq7946 102 7e-17 >seq6149 Length=3715 Score = 154 bits (170), Expect = 1e-32 Identities = 575/889 (65%), Gaps = 22/889 (2%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| | ||||| || || | |||||||| || || |||||||| || ||| Sbjct 994 GTGTACTCGATGATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTGTTGG 1053 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||| ||| || ||||||| || ||||| |||||||| || || || || || || || Sbjct 1054 TTGGATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAACTTGA 1113 Query 23183 GACTCGATGATCGCTCGCCACATAGTCT-GAGCGTGAACACGTCGCACGTACCTGCCTTC 23241 ||||| || ||||| | ||| | || |||| | | | | |||| || Sbjct 1114 CTTTCGATTATTTTGAACCACA-ACTCTTGCGCACGAACGGTCCTGAAGCCCTTGCCCTC 1172 Query 23242 TTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGG 23301 ||||||||||| |||||| | || || || | || | ||| || || | Sbjct 1173 GCTCTCGTACTTTTCGTACAAAGTTTCGAACTCCTCGCCCCACGTATCGTGCAAACCACG 1232 Query 23302 CGATTGCATCGGACACATGAGACTCCACATTGAGTCATT--TTCAACGCGTCTCATAAAA 23359 || | |||| || | || |||| ||| | | || || || |||| || Sbjct 1233 CGCTACGTTCGGGCAAAATAGGGTCCA--TTGCTTATCTGCTTGTACACGCTTCATGAAC 1290 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 | || |||||||| | |||||||||| || || ||||| | | || | || | Sbjct 1291 AAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTTTCGTCCCCATGG 1350 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 || || ||||||||||| || || || ||||||| |||||| || || | ||||| ||| Sbjct 1351 TTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCCAAGTAAATGGCG 1410 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCC---TGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || | || | | ||||||||| || || ||||| || || |||| ||| | Sbjct 1411 AAAGACCC---TTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAG 1467 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCAC-ACTCGA--- 23592 ||||||||||| || |||| |||||| | ||| | || ||||| | | | Sbjct 1468 ACTCTTAGCATAGGTACGATGCCGTTGCTTGATCCG--TTCG--TGCCACGAATGTAGCT 1523 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| | || | |||||| || | || ||||| || | | || ||| Sbjct 1524 ACCAGTACTACGGATGTTGTGGACACTAAGGCCGATGCCACCAGCATACTTGCTTATGCA 1583 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 ||||| |||| |||||||| || || ||||| ||| || || | | || | Sbjct 1584 AGCGCACGACTTCAAGGTGTCGTAAATACCGTCGATCGAGTCATCCTTCATGGTAACAAG 1643 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||| ||||| | || ||| | || ||| |||| ||||| || || | ||||| Sbjct 1644 GAAGCACGAGGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACGTTGGTGTAGCGTG 1703 Query 23773 CGTAAAGTATCCATTCG-ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 || || ||| || | ||| | | ||| || ||||||| || ||||||||| Sbjct 1704 AGTGAA-CATCATTTTGCTCATCAAGTCGTAGGTACGGATGGCGCTCTCGATGTCCTCTT 1762 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 ||| || ||||||| ||| ||||| ||||||| || || | ||| || | | |||| Sbjct 1763 TGTGAATGCCGATGGAGACACGCATGATCATGTGCTGTGGGCGCTCCACGATTTCCCCGT 1822 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | ||||| |||| ||| | || | | ||| || || ||||| || || Sbjct 1823 TGATTTTCAACAAATACGCGCGCTCAAGCGTCTTGAAGCCAAAGTAATC 1871 Score = 116 bits (128), Expect = 3e-21 Identities = 492/766 (64%), Gaps = 57/766 (7%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || ||||| || ||||||| |||| | ||||| || || || || || || Sbjct 67 GTGCGCAGGTAGTACATACCAGTCTTCAAACCCTTTTTCCATGCATAGAAGTGCATAGAG 126 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | |||||| || || | |||| ||||| || |||||||| || ||| Sbjct 127 GTTAGTTTTCCTGTGCTTGGGGCAGCTATGTGTACATTTAAACTTTGACTCTGGTCAATA 186 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGAC--ATTTCCCATACGG 22322 | || || |||||||| |||||||||| | || | ||| ||||||||||| | Sbjct 187 TATGCACCACGATCGGCAGCCATATTTAAGATGGTTTT--TTGACTGATTTCCCATACCG 244 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA- 22381 ||||||||| |||| | |||| || | ||| | ||| | | Sbjct 245 TCTTGTACA-------AATCTTT----GTAT--------TCTTTTGG-CAAACCAGCAAC 284 Query 22382 -TTGTGTA-TGATCAA--ATTTTTAATCGTATCGTTCCACAAAC-CGATGGC-------- 22428 || || | ||||| | || ||| | | ||| | | || || || | Sbjct 285 GTTTTGCACTGATCCACCATCAGCAATAATTTGGTTGCGGACACTCGGTGTCCATATGTT 344 Query 22429 ------GGTCAAATCTTTGACCAGATGACGGTTCAC-CACTTGAAACTCGCCGGACAAGA 22481 |||| ||||| | || ||| |||||| || || || || || | | || Sbjct 345 CAGCTTAATCAAGTCTTTCAACAAATGTTTGTTCACACAGGTG-AATTCACCAGCAAGGA 403 Query 22482 CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCT 22541 | ||||| | ||| |||||||| ||| | || ||||| | || || || |||| || | Sbjct 404 CCCGGCGATTGTACATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTATTGCCCATAATTT 463 Query 22542 GAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT-TT 22600 | | ||| || ||||| ||||| || || | || | ||||| | | ||||| | || Sbjct 464 GCGAGGTTGATGCGGTTGGCATTGGTGCAACCAACAAAGAGTTGCGTACTCCGTGTTGTT 523 Query 22601 GAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCAC 22660 | || | | | || | ||| ||||| | || || || || || | ||||| Sbjct 524 TGATGTTGGCACGT-AGTTCAGCCCAATCCCATCGGTCAGAAGGTGTAAC---GCCCCAC 579 Query 22661 ATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720 ||||| |||||| | ||| ||| | || ||||| |||||||| | |||||| || Sbjct 580 ATATCTGGTTGCAAGATGCCTTTACTGACTGGACTGCCCTCGTACGTCTTGTACGGTCCG 639 Query 22721 TA---TATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | | |||| | ||||||| || ||| ||| || | || || |||||||| Sbjct 640 AACCTTTTCGCTTC---TTCGCAGGAAGCGGTCAAAGCGGCGAAGTAAATGGTCTCGAAA 696 Query 22778 ATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAAC 22837 || | ||||| | | ||| || | |||||| ||||||| |||||||| | ||| Sbjct 697 ATATCTTTGTTTAGCTGCAAGGCTGCTTCACTTTCGAACGGCATGCGCATCATGATGAAT 756 Query 22838 GCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 ||||| || | ||| || ||||| | ||| || || |||| | ||| Sbjct 757 GCGTCAGCTAAACCTTGTACGCCCAAACCAATTGGACGGTGTCTCA 802 >seq7946 Length=2495 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||||||| |||| || ||||| |||||| | ||||| ||||| | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || || || | || |||||||||||| | || || || ||| Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || || | || || ||||| || || ||||||||| Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGAC 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445716134266320