Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7946 141 9e-29 seq6149 89.7 5e-13 seq1170 87.8 2e-12 >seq7946 Length=2495 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || ||||||| || | |||||||| | || | ||| ||||| || || || ||| Sbjct 431 TGACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCG 372 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || ||||| | |||||| | || || |||||| |||||| ||||||||||| ||| Sbjct 371 GACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGA 312 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| ||||| ||| ||||| || | | ||| | || ||| | || || Sbjct 311 GGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCT 252 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| ||| | || || |||||||| || |||||||| ||||||||| Sbjct 251 ACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATA 201 Score = 105 bits (116), Expect = 7e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| || | |||||||| | || | ||| ||||| || || || ||| | Sbjct 200 CCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 141 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| | |||||| | || || |||||| |||||| ||||||||||| ||||| Sbjct 140 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 81 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||||| || | | ||| | || ||| | || || || Sbjct 80 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 21 Query 139718 TCAACGGT 139725 |||| ||| Sbjct 20 TCAAGGGT 13 >seq6149 Length=3715 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 153642 GCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAA 153701 |||||||| ||||| || |||| || || ||| || | | ||||| | |||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 153702 TTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTG 153761 ||||| | ||| || ||| | || ||| ||| ||| ||||| || ||||| ||| Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTG 1080 Query 153762 TATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 || ||||||||||| || || ||||| ||||| |||| || || Sbjct 1081 TAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTTTCGATTAT 1124 >seq1170 Length=16159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 139518 TGCGA-CTACCGCGGACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCT 139576 ||||| | ||| || || ||||||| ||||| | | |||||| || | || || ||| Sbjct 6698 TGCGAGCCACCAGGGCCAGGGCCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCT 6757 Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 ||||||||||| ||||| || || | | ||||| | |||||| || || | ||| Sbjct 6758 TTTTGAATGTTGTAATCCGACAGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATC 6817 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | | ||| ||||| ||||| || ||||||||||| Sbjct 6818 AACCTTTGTTGATCTGGAGGAATTCCTTCTTTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496008062583200