Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7946 141 9e-29 seq1170 89.7 5e-13 >seq7946 Length=2495 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || |||||||||| || | ||||| || | || | || ||||| || ||||| ||| Sbjct 431 TGACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCG 372 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || ||||| | |||||| | ||| || |||||| |||||| ||||||||||| ||| Sbjct 371 GACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGA 312 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||| ||||| || ||||| || | | ||| | || || | |||||| Sbjct 311 GGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCT 252 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || |||| || | || || |||||||| || |||||||| ||||||||| Sbjct 251 ACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATA 201 Score = 102 bits (112), Expect = 8e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| || | ||||| || | || | || ||||| || ||||| ||| | Sbjct 200 CCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGAC 141 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | |||||| | ||| || |||||| |||||| ||||||||||| ||||| Sbjct 140 AATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGA 81 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || ||||| || | | ||| | || || | |||||||| Sbjct 80 ATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACG 21 Query 143138 TCAA 143141 |||| Sbjct 20 TCAA 17 >seq1170 Length=16159 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 142943 CCACCGCGGACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGT 143002 ||||| || || |||| || ||||| | | ||||||||| | || ||||||||||| Sbjct 6704 CCACCAGGGCCAGGGCCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGA 6763 Query 143003 ATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGT 143062 ||||||||||| || || | | ||||| | ||||| || || | |||| | | Sbjct 6764 ATGTTGTAATCCGACAGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTT 6823 Query 143063 TGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || ||||| ||||| || ||||||||||| Sbjct 6824 TGTTGATCTGGAGGAATTCCTTCTTTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506957227788720