Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7946 118 8e-22 seq1170 100 2e-16 >seq7946 Length=2495 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || | ||| | || ||||| || ||||| ||| | | | | ||||||| Sbjct 410 ACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCC 351 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| ||||| || || ||||| ||||| ||||| Sbjct 350 AATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGG 291 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| ||||||||||| |||||| || | ||| ||||||||| Sbjct 290 ATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTA 231 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| ||||| || ||||||||| Sbjct 230 CCGGTCAAAGTCTTTACGAAGATTTGCATA 201 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || | ||| | || ||||| || ||||| ||| | | | | ||||||| Sbjct 182 ACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCC 123 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| ||||| || || ||||| ||||| ||||| Sbjct 122 AATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGG 63 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| ||||||||||| |||||| || | ||| ||||||||| Sbjct 62 ATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTA 3 Query 15335 CC 15336 || Sbjct 2 CC 1 >seq1170 Length=16159 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 15146 AATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTC 15205 || |||| ||||||||| | || || |||||||| ||||||||||| ||| | | | Sbjct 6728 AACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAGAGTACGC 6787 Query 15206 GCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCT 15265 | ||||| || |||||||| ||| ||||||| | |||||| || |||||||||||| Sbjct 6788 CCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGAATTCCTTCT 6847 Query 15266 TTGTC 15270 ||||| Sbjct 6848 TTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362139380773761