Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7946 132 1e-25 seq1170 104 5e-17 seq1156 89.7 1e-12 >seq7946 Length=2495 Score = 132 bits (146), Expect = 1e-25 Identities = 172/237 (73%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104325 TATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 || ||||| || |||| ||| | ||| |||| || || || | || || || ||||| Sbjct 438 TACTTATTGACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATT 379 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||| || | || | |||||||| | ||| ||||||||||| || | | || || Sbjct 378 GTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTG 319 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| || ||||| || || || |||||| || || ||||| | ||||||||| Sbjct 318 ATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCT 259 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || ||||| || | || ||||| || || ||||| Sbjct 258 TGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 111 bits (122), Expect = 4e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| || || || | || || || ||||| ||||| || | || | ||||| Sbjct 186 AAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTC 127 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| ||||||||||| || | | || ||||| ||||| || ||||| || || Sbjct 126 TTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTC 67 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || |||||| || || ||||| | ||||||||| |||||||| || || || || || Sbjct 66 TTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGT 7 Query 104527 CTTACC 104532 ||||| Sbjct 6 TTTACC 1 >seq1170 Length=16159 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | || ||| || |||| |||||| || |||||||| ||||| || || || || Sbjct 6719 CCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 6778 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | || ||||| | ||||| || || || || | ||| |||||||| ||||| Sbjct 6779 AGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGA 6838 Query 104453 ATTCCTTCTTTATCCTGAAT 104472 ||||||||||| || ||||| Sbjct 6839 ATTCCTTCTTTGTCTTGAAT 6858 >seq1156 Length=16538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 214/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 238557 AAACAGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATG 238616 || ||| | ||| || | |||| ||||| | | ||||| | || || || ||||| Sbjct 3206 AAGCAGTTTGAGCAAGGCAAAACGCACGAACAGTTGTGGAACGCAGCACAAATGGAAATG 3265 Query 238617 GTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAA 238676 ||| | |||||||||||| |||| | || ||||||||||||||||| || || || Sbjct 3266 GTACATTTTGGCAAAATGCATGGTTTTATGCGGATGTATTGGGCTAAAAAAATTCTGGAG 3325 Query 238677 TGGACTAGATCTCCAAAGGAAGCTCTTAGATA-TAGTATTTATCTGAACGATAAATACGA 238735 ||| | | || || | ||||| ||||| | | ||||| ||||| || ||||| Sbjct 3326 TGGTCGAAGTCGCCCGAAGAAGC-GTTAGAGACTGCAATTTACCTGAATGACAAATATAG 3384 Query 238736 ACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACA 238795 || ||||| ||| || || || || | || || ||| | || || || || Sbjct 3385 CCTAGACGGCCGGGACCCGAATGGTTATGCTGGATGCGCATGGGCTATTGCAGGTTTGCA 3444 Query 238796 CGATAGGGCATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 |||| | ||| || |||| | || || ||| || ||||||||||| | | || Sbjct 3445 CGATCAAGGTTGGAGGGAACGACCAGTTTTCGGGAAAATTCGATACATGAATCACGCTGG 3504 Query 238856 AACTAAGAAAAAATTTGATGT 238876 |||| ||||||| |||| Sbjct 3505 TTGTAAGCGAAAATTTAATGT 3525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151265319573868