Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6814 147 3e-31 seq646 140 5e-29 >seq6814 Length=3234 Score = 147 bits (162), Expect = 3e-31 Identities = 186/255 (73%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || || ||||| |||||||||||||| || ||| | ||||| ||||||||||| Sbjct 302 TCTTCGTGACAATATCCAGGGAATCACCAAGCCCGCCATCAGACGTCTCGCTCGTCGTGG 361 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| |||||||| | ||||||| |||| |||| ||| | ||| | || Sbjct 362 TGGTGTGAAACGTATCTCTGGACTCATCTATGAGGAGACCCGTGGTGTCCTCAAGGTGTT 421 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| || || || || ||| ||||| |||||| | ||||| || Sbjct 422 CCTCGAGAACGTCGTCAGAGACGCCGTCACCTACACCGAACACGCTCGCAGAAAGACCGT 481 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| ||||||| || | || | || || |||| |||| || || || Sbjct 482 TACGGCTATGGACGTCGTCTACGCTCTTAAGAGACAGGGACGTACTCTTTACGGATTCGG 541 Query 16693 AAGTTAA--TCTTCT 16705 | ||||| |||||| Sbjct 542 AGGTTAAACTCTTCT 556 >seq646 Length=20039 Score = 140 bits (154), Expect = 5e-29 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | | || ||||| |||||||| |||||||||||||| ||| Sbjct 19678 GCCAAGCGTCACCGCAAGGTTTTGCGTGATAATATCCAAGGTATCACCAAGCCAGCAATC 19737 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||| | | ||||| || ||| | ||||||| || |||| ||||| | | Sbjct 19738 CGCCGTCTAGCTAGAAGAGGTGGTGTTAAGAGAATCTCTGGGTTAATCTACGAAGAAACT 19797 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || | ||||| | | |||||| |||||| | ||| |||||| Sbjct 19798 CGTGGTGTACTTAAAGTATTCCTTGAATCTGTTATCAGAGATGCTGTTACCTACACCGAG 19857 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | || ||||| || | |||||| | || || ||||||||||| |||||| Sbjct 19858 CACGCACGCAGGAAAACTGTTACTGCTATGGATGTTGTATACGCATTGAAACGCCAAGGC 19917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066952036553