Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6149 143 7e-29 seq2807 86.0 2e-11 >seq6149 Length=3715 Score = 143 bits (158), Expect = 7e-29 Identities = 485/749 (65%), Gaps = 10/749 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| || ||||| ||| ||| || || || | ||||| || | || Sbjct 1709 TTCACTCACGCTACACCAACGTTGTTCAACGCCGGTACCCCGCGCCCACAATTGGCCTCG 1650 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | | |||||||| || || ||||| ||||| | ||||| | ||| | Sbjct 1649 TGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGTATTTACGACACCTTGAAG--T 1592 Query 363667 TGTGCTCTT--ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT- 363723 |||| ||| || |||| |||| || || || || | ||||||| | ||| Sbjct 1591 CGTGCGCTTGCATAAGCAAGTATGCTGGTGGCATCGGCCTTAGTGTCCACAACATCCGTA 1532 Query 363724 GCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | || | || |||||||| ||||| |||| || || | || || ||||| Sbjct 1531 GTACTGGT-AGCTACATTCGTGGCACGAACGGATCAAGCAACGGCATCGTACCTATGCTA 1473 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 | || || | | || || | ||||| ||||| || || || || ||||||||| | Sbjct 1472 AGAGTCTTCAATGACACCGCACGCTACGTAGACCAAGGGGGCGGCAAACGCAAAGGGTCT 1413 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || || || | || || ||| | || | || || || | || | |||| Sbjct 1412 TTCGCCATTTACTTGGAACCATGGCATTCGGACGTCTTCGAATTCTTGGATTTGAAGAAA 1353 Query 363904 AACACGGGAAAAGAGGAATTGC--GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 ||| || | || || ||| | || ||||| ||||||| || | ||| | | | Sbjct 1352 AACCATGGGGACGA--AAATGCCCGCGCGCGTGACTTGTTCTACGCCATGTGGATACCCG 1295 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 || || |||||||| || | |||| |||| | ||| | || |||||||| ||| | Sbjct 1294 ACTTGTTCATGAAGCGTGTACAAGCAGATAAGCAATGGACCCTATTTTGCCCGAACGTAG 1235 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | ||| | |||| ||||| || || | | || | ||||||||||| || Sbjct 1234 CGCGTGGTTTGCACGATACGTGGGGCGAGGAGTTCGAAACTTTGTACGAAAAGTACGAGA 1175 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| |||| | ||| ||| || || || | ||||| || || || Sbjct 1174 GCGAGGGCAAGGGCTTCAGGACCGTTCGTGCGCAAGAGTTGTGGTTCAAAATAATCGAAA 1115 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 || |||| || ||||| || || ||| | |||||||| |||||||||| || |||| Sbjct 1114 GTCAAGTTGAAACTGGAACCCCATACATGCTTTACAAAGACGCGTGCAACCGTAAATCCA 1055 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || || | || || ||| | ||||| | || || || || || || |||| Sbjct 1054 ACCAACAAAACTTGGGCACCATTAAAAGTAGCAATTTGTGCACTGAAATCATCGAGTACA 995 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAAC 364290 |||| || || || | || || |||||| Sbjct 994 CCGCACCTGATGAAATCGCAGTTTGTAAC 966 >seq2807 Length=647 Score = 86.0 bits (94), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 371451 AGCATACCAATGGTCATGCGTGATGGGATGGCATGTGGATTGATGATAATATCGGGTGCA 371510 ||||| ||||| ||||| | ||||| | |||||||| ||||| |||||||| |||| Sbjct 513 AGCATTCCAATTGTCATTCTAGATGGAAATGCATGTGGGTTGATAATAATATCTGGTGTC 454 Query 371511 ACTCCGTCGGCTGTGCATGGAAAGTCGGCTGCTGGC-ATAGTGACGCCACACACACCTTT 371569 | || | || |||| | || | |||| ||| | || | ||| |||||||| Sbjct 453 ATACCAGATTCCGTAAATGGCATATCTCGTTGTGGCCATAAT-ACACTACAAACACCTTT 395 Query 371570 TTGCCCGTGCCTGGCCGAGAATTTGTCGCCTACCATTGGAATACGA 371615 |||||| | ||||| || ||||| || ||||| |||||| ||||| Sbjct 394 TTGCCCATTCCTGGAAGAAAATTTATCACCTACAATTGGATTACGA 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303202956354422