Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6149 143 3e-29 seq7946 118 1e-21 seq1170 86.0 6e-12 >seq6149 Length=3715 Score = 143 bits (158), Expect = 3e-29 Identities = 943/1482 (64%), Gaps = 74/1482 (5%) Strand=Plus/Plus Query 145097 TACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTT 145156 |||| ||| || ||| | || || || ||||||||||||||| ||||| | ||| | | Sbjct 415 TACATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTATTGCCCATAATTTGCGAGGTTGAT 474 Query 145157 GCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCC 145216 ||||| ||||| || ||||| || || ||||| | ||||| | ||||||| | Sbjct 475 GCGGTTGGCATTGGTGCAACCAACAAAGAGTTGCGTACTCCGTGTTGTTTGATGTTGGCA 534 Query 145217 TTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAA 145276 ||| | ||||||||||| | || || | ||| ||||||| || ||||| Sbjct 535 CGTAGTTCAGCCCAATCCCATCGGTCAGAAGGTGTAACGCCCCACATATCTGGTTGCAAG 594 Query 145277 ATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAG-TTTTGGCGAG 145335 ||||| | ||| | || ||||| | | | |||| | | || || |||| || Sbjct 595 ATGCCTTTACTGACTGGACTGCCCTCGTACGTCTTGTA-CGGTCCGAACCTTTTCGCTTC 653 Query 145336 CTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAG 145395 ||||| || || |||| |||| ||||| |||||| ||| | |||| ||| | Sbjct 654 TTCGCAGGAAGCGGTCAAAGCGGCGAAGTAAATGGTCTCGAAAATATCTTTGTTTAGCTG 713 Query 145396 CATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTG 145455 || ||| | || || ||| |||||||||||| || | || || || || | || || Sbjct 714 CAAGGCTGCTTCACTTTCGAACGGCATGCGCATCATGATGAATGCGTCAGCTAAACCTTG 773 Query 145456 TATTCCCACGCCGATGGGCCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATA 145510 || |||| || || || || ||| ||| |||| |||| | || ||| | || Sbjct 774 TACGCCCAAACCAATTGGACGGTGTCTCAAGTTGGAGTACTCAGCTTCTTTTACTGGGTA 833 Query 145511 GGATATCGATTACGGTCGATAATTTTATTCAAGTT--TCGCACTACTACCTTTGTAATGT 145568 | | | | || || || | |||||||| ||| | ||| ||| || | Sbjct 834 GTA----GTTGACA-TCAATTACACGGTTCAAGTTGATCGTA--ACTTGCTTGACGATAT 886 Query 145569 GCCGCAA--CTTTTCAAAGTC--AAACCGAG----CCTCGT--CAACGACCACACAGCTA 145618 || || | ||| |||| |||| | |||||| | | | || | Sbjct 887 --CGAAAAGCATTTGGAAGTTGTAAACTGGTTTGTCCTCGTTGCTTTGGTCGACCATTTT 944 Query 145619 TTGACGGCGA-TCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTAC 145677 | || | | | | ||||| ||||||||||| | || || | || |||| | | Sbjct 945 TGGAAGACAAATACTAGCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGAT 1004 Query 145678 GATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCT 145737 ||| || | |||||||||||||| ||| ||||| |||| ||||| || || ||| | Sbjct 1005 GATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACG 1064 Query 145738 GTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGA- 145796 |||||||||||| ||||| |||||||| || ||||| || || || | || | | Sbjct 1065 GTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTTTCGATTAT 1124 Query 145797 -TAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGC---GGCCCTCTTCTTCG 145852 | ||| ||| || |||||||| || | | || | ||| |||||| ||| Sbjct 1125 TTTGAAC--CACAACTCTTGCGCACGAAC--GGTCCT-GAAGCCCTTGCCCTCGCTCTCG 1179 Query 145853 TA--TTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACT 145910 || |||| | | || | || ||| | || | |||| || || | | || Sbjct 1180 TACTTTTCGTACAAAGTT--TCGAACTCCTCGCCCCACGTATCGTGCAAACCACG-CGCT 1236 Query 145911 -TGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCT 145969 ||| || || | || | |||| | || | || |||| ||| ||||| || Sbjct 1237 ACGTTCGGGCAAAATAGGGTCCATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCG 1296 Query 145970 GGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCAT-GTTTCG 146028 || | ||||| ||||| | |||||| ||||| | || || | ||||| |||| Sbjct 1297 GGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTTTC-GTCCCCATGGTTTTT 1355 Query 146029 CTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGG 146087 |||||||| ||| | | | ||| ||||| ||||| ||||| | || | ||||| | Sbjct 1356 CTTCAAATCCAAGAATTCGA-AGACGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAG 1414 Query 146088 CTCCTTTTCGTTTGCCACCC---TGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCA 146144 ||||| |||||||| ||| ||||| |||| ||| | ||| || ||||| | | Sbjct 1415 ACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTA 1474 Query 146145 CCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT----AGAGTTTA--TTCTGGTGCCGC 146198 ||| || ||| |||| || | |||||||| || | || | | || | | Sbjct 1475 GCATAGGTACGATGCCGTTGCTTGATCCGTTCGTGCCACGAATGTAGCTACCAGTACTAC 1534 Query 146199 GGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGC 146258 || | | || ||| | | ||||| || || | |||||| ||| |||| Sbjct 1535 GG------ATGTTGTGGACACTAAGGCCGATGCCACCAGCATACTTGCTTATGCAAGCGC 1588 Query 146259 A-GTCGCCGAGCGTCTCGTAGATGCCGTCAAT---GCTATCGCTTCGAATGCCGAGCAGA 146314 | | | | || || ||||| || ||||| || | ||| |||| ||| | || Sbjct 1589 ACGACTTCAAG-GTGTCGTAAATACCGTCGATCGAGTCATC-CTTC--ATGGTAACAAGG 1644 Query 146315 AAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGC 146374 ||||||||| || || | ||| || || || ||||||||| || | ||||| Sbjct 1645 AAGCACGAGGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACGTTGGTGTAGCGTGA 1704 Query 146375 GTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG-TCTTGAATGTCGTCGCC 146433 || ||||| || |||||||| || || ||| ||| ||| | ||||| || Sbjct 1705 GTGAACATCATTTTGCTCATCAAGTCGTAGGTACGGATGGCGCTCTCG-ATGTCCTCTTT 1763 Query 146434 ATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTC 146493 |||||||| | | ||| ||||||| |||||| || || |||||| | | || || Sbjct 1764 GTGAATGCCGATGGAGACACGCATGATCATGTGCTGTGGGCGCTCCACGATTTCCCCGTT 1823 Query 146494 AATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAA 146535 || || |||||||| || ||| || || ||| | || || Sbjct 1824 GATTTTCAACAAATACGCGCGCTCAAGCGTCTTGAAGCCAAA 1865 >seq7946 Length=2495 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || ||||| || | ||| | ||||||||| || ||||| ||| || |||||| | Sbjct 416 CGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCG 357 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || | ||||| || || |||| || || ||||| || ||||| || ||||| ||| Sbjct 356 TCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTG 297 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | | || | |||||| | | || | ||| | ||| | | Sbjct 296 TCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATG 237 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||||| | ||| |||||||| || ||||| Sbjct 236 GTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 >seq1170 Length=16159 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| || | || |||||||||| || || || ||||||||||||||||| Sbjct 6718 GCCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGA 6777 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || ||| || || | ||| ||||| ||| | || || | || || || ||||| Sbjct 6778 CAGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGG 6837 Query 131127 GATTCCTTCTTTGTC 131141 |||||||||||||| Sbjct 6838 AATTCCTTCTTTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471959574656640