Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7946 131 1e-25 seq1170 113 4e-20 >seq7946 Length=2495 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||||||||||||||||||| ||||||| | || || || | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| |||||||||| ||| ||||| ||||| ||||| || || || Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || ||||| ||||| | ||||| || ||| |||||| Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAAT 381 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || | || | || ||||| || | ||| ||||||| Sbjct 382 ATCCAAAAGGAGGCAACCTTGCACTTAGTCCTTCGCCTACGAGGAGG 428 >seq1170 Length=16159 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 25006 TATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTA 25065 ||| ||| ||||||||||| || ||| |||| | | | || || | || ||| || Sbjct 6938 TATATGTCAAGACTTTGACTGGAAAAACCATACCTCTATATGTTGAATTTTCGTACAGTA 6879 Query 25066 TCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 | ||| || | || | ||| ||||||||||| ||||| || || ||||| || Sbjct 6878 TT-AGTGACGTCAAACGTGCAATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGG 6820 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || || || |||||||| || ||||||| || ||| || |||||||| |||||| Sbjct 6819 TTGATATTCGCGGGCAAACAGTTGGAAGATGGGCGTACTCTGTCGGATTACAACATTCAA 6760 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || |||||||||| |||||| || | || || Sbjct 6759 AAAGAATCAACTTTACATTTAGTTCTAAGGTTACGCGGCGG 6719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433280358430115