Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6149 168 6e-37 seq7946 132 4e-26 seq1170 120 3e-22 >seq6149 Length=3715 Score = 168 bits (186), Expect = 6e-37 Identities = 1053/1656 (64%), Gaps = 60/1656 (4%) Strand=Plus/Plus Query 128781 GTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGT 128840 ||| || || ||||| || || || ||| ||| | ||||||| |||||||| || || Sbjct 30 GTCGACAGTGAATTTGATGGCATCTGCTTTTGGCCTTGTGCGCAGGTAGTACATACCAGT 89 Query 128841 TTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC-GTAGGTGGGTT 128899 |||||||| ||||||| | | | ||| || | ||| | | | || |||| Sbjct 90 CTTCAAACCCTTTTTCCATGCATAGAAGTGCATAGAGGTTAGTTTTCCTGTGCTTGGGGC 149 Query 128900 GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCA 128959 || | | ||| || |||||| || |||||| | | || ||||||||||||| Sbjct 150 AGCT-ATGTGTACATTTAAACTTTGACTCTGGTCAATATATGCACCACGATCGGCAGCCA 208 Query 128960 TACCAATCAAA--TTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 || | | ||||| ||| |||||||| ||||| ||||| | ||| | | Sbjct 209 TATTTAAGATGGTTTTTTGACTG--ATTTCCCATACCGTCTTGTACAAATCTTTGTATTC 266 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 |||||| | | ||| ||| ||||| || | |||||||||| ||| || | Sbjct 267 TTTTGGCAAACCAGCAACGTTTTGCACTGATCCACCATCAGCAATAATTTGGTTGCGGAC 326 Query 129078 CTGTTCGTTGTACAAAT--TCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATT-AC 129134 ||| ||| || || |||| || ||||| || | ||| | |||||| | | Sbjct 327 AC--TCGGTGTCCATATGTTCAGCTTAATCAAGTCTTTCAACAAATGTTTGTTCACACAG 384 Query 129135 TTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGA 129194 |||| ||||| || | || || ||| ||| |||||| |||| | ||||| || | Sbjct 385 GTGAAT-TCACCAGCAAGGACCCGGCGATTGTACATGTTGGAGGTGTAAGGCTCGAAGCA 443 Query 129195 TTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGA 129254 || || ||||| | ||||| | |||| ||||| ||||| || || | | || Sbjct 444 CTCGTTATTGCCCATAATTTGCGAGGTTGATGCGGTTGGCATTGGTGCAACCAACAAAGA 503 Query 129255 GTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGT 129314 ||| || | ||||| ||||| |||| || || | ||| ||||| ||| | Sbjct 504 GTTGCGTACTCCGTGTTGTTTGATGTTGGCACGTAGTTCAGCCCAATCCCA--TCGGTCA 561 Query 129315 GGGTGTGTGATTCC--ACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAG 129372 | |||| | || ||| || |||||| || || |||| | |||||| | Sbjct 562 GAAGGTGTAACGCCCCACATATCTGGTTGCAAGATGCCTTTACTGACTGGACTGCCCTCG 621 Query 129373 TAGGAATCGTGCACG--CCGTAAGCTTTT-GCCAATTCGCAACTCGCTTCCAATGCGCCA 129429 || | || || ||| ||| || ||||| || |||||| || ||| ||| | Sbjct 622 TACG--TCTTGTACGGTCCG-AACCTTTTCGCTTCTTCGCAGGAAGCGGTCAAAGCGGCG 678 Query 129430 AAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGC 129489 || ||||| || ||| ||| | |||| | | ||| || |||||| ||||| Sbjct 679 AAGTAAATGGTCTCGAAAATATCTTTGTTTAGCTGCAAGGCTGCTTCACTTTCGAACGGC 738 Query 129490 ATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGT 129549 || |||| |||| |||| ||| || |||||||| | |||| ||| || || || ||| Sbjct 739 ATGCGCATCATGATGAATGCGTCAGCTAAACCTTGTACGCCCAAACCAATTGGACGGTGT 798 Query 129550 TTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTT 129609 | ||||| | | || | || |||||||||| || || | ||| Sbjct 799 CTCAAGTTGGAGTACTCAGCTTCTTTTACTGGGTAGTAGTTGACATCAATTACACGGTTC 858 Query 129610 AAATTCTTGACCACAATTTTCGTTACG-TATTTTAA--CATTTCAAAATTGTA--CTCGC 129664 || || || | || || | | ||| ||| || ||||| || ||||| || | Sbjct 859 AAGTT---GATCGTAACTTGCTTGACGATATCGAAAAGCATTTGGAAGTTGTAAACTGGT 915 Query 129665 CTA-CATCGATG------TCGACAAATTGATTG--ACACAAATCGAGGCCAAATTGCAGA 129715 | | ||| || ||||| | || ||| | |||||| ||||| || || | Sbjct 916 TTGTCCTCGTTGCTTTGGTCGACCATTT--TTGGAAGACAAATACTAGCCAAGTTACAAA 973 Query 129716 CGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAA 129775 | || |||| | | ||||||||| ||||| | ||||||||| ||| |||||| Sbjct 974 CTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAATTGCTACTTTTAA 1033 Query 129776 TGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACG 129835 |||||||||| | | ||| || ||| |||||| || |||||||| | |||||| | Sbjct 1034 TGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATG 1093 Query 129836 GCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCT 129895 | || || ||||| ||||| |||||| || | |||| ||| | || || | Sbjct 1094 GGGTTCCAGTTTCAACTTGACTTTCGATTATTTTGAACCACAACTCTTGCGCAC-GAACG 1152 Query 129896 GTCTTACAAAT-TTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCG 129954 ||| | | ||||| ||||||| | |||| ||| || || ||| Sbjct 1153 GTCCTGAAGCCCTTGCCCTCGCTCTCGTACTTTTCGTACAAAGTTTCGAACTCCTCGCCC 1212 Query 129955 T--GTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCC--ATC 130010 ||| ||| | | | ||| || | | ||| || | | |||| || | ||| Sbjct 1213 CACGTATCGTG-CAAACCACG-CGCTACGTTCGGGCAAAATAGGGTCCA--TTGCTTATC 1268 Query 130011 CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGC 130070 |||| || || ||||| ||||| ||||||| ||||| |||||| ||||| || ||||| Sbjct 1269 TGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGC 1328 Query 130071 TTTTCTATCCTCGGCACCCATGTTACGT-TTCAGTTCAAGGAAATCGTAAATGTCGGCGT 130129 || ||| | |||||| | | |||| || | ||| ||| | | ||| | | Sbjct 1329 GCGGGCATTTTCGTC-CCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAAT 1387 Query 130130 GCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTGCC---CCCTTGGTCAACGT 130186 |||| ||||| | ||||| || | | || || |||||||| ||||||||| |||| Sbjct 1388 GCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGT 1447 Query 130187 GGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTG 130246 ||| ||| | ||| |||||| | ||| | | | |||||| | ||||| | Sbjct 1448 AGCGTGCGGTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGTTGCTTGATCCGTTCG 1507 Query 130247 TGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGC 130306 ||| |||| | || ||| | || | ||| || || || || || ||||| || Sbjct 1508 TGCCACGAATGTAGCTACCAGTACTACGGATGTTGTGGACACTAAGGCCGATGCCACCAG 1567 Query 130307 CAAATTTTGATATCAACGCGCAATCGCGT--AGCGTTTCATAAATGCCAACGATACTGTC 130364 || | || ||| | ||||| || | | || || ||||| || |||| ||| Sbjct 1568 CATACTTGCTTATGCAAGCGCA--CGACTTCAAGGTGTCGTAAATACCGTCGATCGAGTC 1625 Query 130365 TTCTTTAATGTTTAGGAGGAAACACGAGGCCAATTG 130400 || || ||| | | ||||| |||||||||||||| Sbjct 1626 ATCCTTCATGGTAACAAGGAAGCACGAGGCCAATTG 1661 >seq7946 Length=2495 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||||||||| |||| ||||| || ||| | | | Sbjct 202 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTTGACGTAGAACCAAGC 261 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||| || ||||||||||| || ||||| || ||||| Sbjct 262 GATACCATCGAAAACGTGAAGCAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAG 321 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || || || || || ||||| | ||||| ||||| Sbjct 322 CAACGATTGATCTTTGCTGGAAAGCAATTGGAAGACGGGCGCACATTGTCCGACTACAAT 381 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || | ||| | || ||||| | || | || |||||| Sbjct 382 ATCCAAAAGGAGGCAACCTTGCACTTAGTCCTTCGCCTACGAGGAGGT 429 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 |||||||| |||| ||||| || ||| | | ||||||| | || | | || ||||| Sbjct 1 GGTAAAACCATCACCCTTGACGTAGAACCAAGCGATACCATCGAAAACGTGAAGCAAAAG 60 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || ||||||||||| || ||||| || ||||| ||||| | || ||||| || || || Sbjct 61 ATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGAAAGCAA 120 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 || || || ||||| | ||||| ||||| || ||||| || | ||| | || ||| Sbjct 121 TTGGAAGACGGGCGCACATTGTCCGACTACAATATCCAAAAGGAGGCAACCTTGCACTTA 180 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || | || || || || ||| Sbjct 181 GTCCTTCGCTTACGTGGTGGT 201 >seq1170 Length=16159 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22305 AATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACA 22364 |||||||||||| || || ||||| || ||||||||| | | ||||| || |||||||| Sbjct 6859 AATTCAAGACAAAGAAGGAATTCCTCCAGATCAACAAAGGTTGATATTCGCGGGCAAACA 6800 Query 22365 GTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTT 22424 ||| || ||| || || | || ||||||||||||||||||||||| || ||||||| Sbjct 6799 GTTGGAAGATGGGCGTACTCTGTCGGATTACAACATTCAAAAAGAATCAACTTTACATTT 6740 Query 22425 AGTTTTGCGATTGCGCGGAGG 22445 |||| | | || ||||| || Sbjct 6739 AGTTCTAAGGTTACGCGGCGG 6719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419681853660865