Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7946 143 6e-29 >seq7946 Length=2495 Score = 143 bits (158), Expect = 6e-29 Identities = 151/195 (77%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| ||||||| | ||||| |||||||| ||||| ||||| || ||| Sbjct 392 TCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAG 333 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCAC 288398 |||| || || ||| ||||| || ||||| || || ||||| ||| |||| ||| Sbjct 332 ATCAATCGTTGCTGA---TCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTT-CAC 277 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | |||||| | |||||| || || ||||| || || ||||||| |||||| Sbjct 276 GTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTT 217 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 216 TACGAAGATTTGCAT 202 Score = 113 bits (124), Expect = 1e-19 Identities = 128/168 (76%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||||||||| ||||||| | ||||| |||||||| ||||| ||||| || ||| Sbjct 164 TCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAG 105 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCAC 288398 |||| || || ||| ||||| || ||||| || || ||||| ||| |||| ||| Sbjct 104 ATCAATCGTTGCTGA---TCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTT-CAC 49 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || | |||||| | |||||| || || ||||| || || || Sbjct 48 GTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179518053701238