Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq537 84.2 5e-11 seq536 84.2 5e-11 >seq537 Length=27904 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| | || | ||| ||||||||| || || | | |||||||| Sbjct 22311 TCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAGA 22370 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || | || || |||||||| || || ||||| || ||||||| ||| |||||||||| Sbjct 22371 TGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATGC 22430 Query 333435 TTCCAAAC-ACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 || || | ||| |||||| ||||| || || || | ||| || | || || Sbjct 22431 TTTTTTACAAGACCCGAGCATGGCTT-CATTTCTCCAGTAAGAAGCTTGATCATGGTACT 22489 Query 333494 TTTTCCCGCACCATT 333508 ||||| || ||||| Sbjct 22490 CTTTCCAGCTCCATT 22504 >seq536 Length=27921 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || ||||||||||| | || | ||| ||||||||| || || | | |||||||| Sbjct 5611 TCCTTGTCTTCACCACCTTCGTATCTCCAGCGGATATACTCATTAGGAGACTTGTCAAGA 5552 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || | || || |||||||| || || ||||| || ||||||| ||| |||||||||| Sbjct 5551 TGTTGTTCAATATGGTGGAATGCGTGTTGTGCTACATAAGCAAAACGGCAATTTGGATGC 5492 Query 333435 TTCCAAAC-ACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 || || | ||| |||||| ||||| || || || | ||| || | || || Sbjct 5491 TTTTTTACAAGACCCGAGCATGGCTT-CATTTCTCCAGTAAGAAGCTTGATCATGGTACT 5433 Query 333494 TTTTCCCGCACCATT 333508 ||||| || ||||| Sbjct 5432 CTTTCCAGCTCCATT 5418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102752527406350