Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6149 145 9e-30 >seq6149 Length=3715 Score = 145 bits (160), Expect = 9e-30 Identities = 544/842 (65%), Gaps = 17/842 (2%) Strand=Plus/Plus Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 |||| ||||| || | | | ||||| | |||||||| || ||||| || |||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 || ||| ||||||||||||||||| | ||| || || || ||| ||||| || ||| Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTG 1080 Query 114599 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT--TCCAGACAT 114656 |||||||||||||| || || || || || ||||| || || | ||| | | Sbjct 1081 TAAAGCATGTATGGGGTTCCAGTTTCAACTT--GACTTTCGATTATTTTGAACCACAACT 1138 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | || | || || | | | ||||| |||||||||| ||| | | || Sbjct 1139 CTTGCGCACGAACGGTCCTGAAGCCCTTGCCCTCGCTCTCGTACTTTTCGTACAAAGTTT 1198 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 | ||||| || ||| | || | || | || | ||||| || || | || Sbjct 1199 CGAACTCCTCGCCCCACGTATCGTGCAAACCACGCGCTACGTTCGGGCAAAATAGGGTCC 1258 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 |||| | | | | |||||||||||||| | ||| || ||||| | || |||| | Sbjct 1259 ATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACA 1318 Query 114837 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 114896 || || ||| || | ||| ||||| || || ||| ||||| || || | || Sbjct 1319 AGTCACGCGCGCGGGCATTTTCGTCCCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGA 1378 Query 114897 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCT 114953 |||| ||||| ||||||| ||| | |||| ||||| || || | || | | Sbjct 1379 CGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTT 1438 Query 114954 GGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATT 115013 ||| ||| || | || ||| |||| || || | ||||| || | ||| || | | || Sbjct 1439 GGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGT-TGCTT 1497 Query 115014 G-GCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACC 115071 | || || || || ||||| | || | | | || | |||| | || Sbjct 1498 GATCCGTTCGTGCCACGAATGTAGCTAC-CAGTACTACGGATGTTGTGGACACTAAGGCC 1556 Query 115072 AATACCCCCTGCCCACTTTGAGATT-TGC--GCGCACTCCGTGAGACTGCCGTAGATCCC 115128 || || || || |||| | || ||| |||||| | | | || |||| || || Sbjct 1557 GATGCCACCAGCATACTT---GCTTATGCAAGCGCACGACTTCAAGGTGTCGTAAATACC 1613 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 ||||||||||||| |||| | | | ||||||||| | || |||||| | || || Sbjct 1614 GTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGAGGCCAATTGTGGGCGCGGGGT 1673 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTA 115248 ||| |||||||| | |||||||| ||||| ||||||| || | |||| ||||| Sbjct 1674 ACCGGCGTTGAACAACGTTGGTGTAGCGTGAGTGAACATCATTTTGCTCATCAAGTCGTA 1733 Query 115249 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 ||| | | || ||||| || |||||| ||||| ||||| ||||| | ||| Sbjct 1734 GGTACGGATGGCGCTCTCGATGTCCTCTTTGTGAATGCCGATGGAGACACGCATGATCAT 1793 Query 115309 GT 115310 || Sbjct 1794 GT 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597286240914680