Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6149 147 2e-30 seq7946 111 2e-19 seq1170 105 7e-18 >seq6149 Length=3715 Score = 147 bits (162), Expect = 2e-30 Identities = 558/858 (65%), Gaps = 21/858 (2%) Strand=Plus/Plus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 |||||||| ||||| || ||||| |||| |||| | | ||||| | ||||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 || || | | ||||||||||| ||||| || || ||||| |||||| ||||||||| Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTG 1080 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACT- 154768 || | ||||| ||||| || ||||| ||||| |||| || ||| || ||| ||| Sbjct 1081 TAAAGCATGTATGGGGTTCCAGTTTCAACTTGACTTTCGATTATTTTGAACCACA-ACTC 1139 Query 154769 TCGCGCCTCAACTTGACAAGTAAATCGATT---TTCGCTCTCATATTGTTCGTACAGTTT 154825 | |||| ||| | | | || | || |||||||| || | |||||||| | Sbjct 1140 TTGCGCACGAAC-GGTC--CTGAAGCCCTTGCCCTCGCTCTCGTACTTTTCGTACAAAGT 1196 Query 154826 TTCAAACTCTAAACTGTACACGTCCGACAAACC-GGGACAGCGGTCGGGACACATCAATG 154884 ||| ||||| | || || |||||| | | || ||||| || | | | Sbjct 1197 TTCGAACTCCTCGCCCCACGTATCGTGCAAACCACGCGCTACGTTCGGG-CAAAATAGGG 1255 Query 154885 ACCACATTTCGT-TTTG-TTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTA 154942 | |||| | | | || |||||| || ||||| ||||| || || | ||||| ||||| Sbjct 1256 TC--CATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTA 1313 Query 154943 CAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCAT-GTTTCGCTTTAAATTCAAAAAAT 155001 ||||| |||||||| | ||| | ||||| |||| ||| |||| ||| || | Sbjct 1314 GAACAAGTCACGCGCGCGGGCATTTTC-GTCCCCATGGTTTTTCTTCAAATCCAAGAATT 1372 Query 155002 CATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TC 155058 | | | ||| | ||||| || || || || | ||| | | ||||||||||| | Sbjct 1373 CGAAGACGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGC 1432 Query 155059 CTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGC 155118 | ||||| || |||| || | | |||| | || | | || ||| | | |||| Sbjct 1433 CCCCTTGGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGT 1492 Query 155119 TGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAA 155178 || | ||||| |||||||| || ||| || | ||| || || ||| ||| Sbjct 1493 TGCTTGATCCGTTCGTGCCACGAATGTAGCTACCAGTACTACGGATGTTGTGGACACTAA 1552 Query 155179 CGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTC 155238 ||| | || || | || || ||| || || | ||| || ||||| || | Sbjct 1553 GGCCGATGCCACCAGCATACTTGCTTATGCAAGCGCACGACTTCAAGGTGTCGTAAATAC 1612 Query 155239 CTTTGATGCTGTCTTCTTTCAACGTCAACAA-GAAACACGAAGATAATTGAGGTTGAGGG 155297 | | ||| ||| || |||| || ||||| ||| ||||| | ||||| || | ||| Sbjct 1613 CGTCGATCGAGTCATCCTTCATGGT-AACAAGGAAGCACGAGGCCAATTGTGGGCGCGGG 1671 Query 155298 CAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTG 155357 ||||| || || || || ||||||| || ||||| | ||| | |||| | Sbjct 1672 GTACCGGCGTTGAACAACGTTGGTGTAGCGTGAGTGAACATCATTTTGCTCATCAAGTCG 1731 Query 155358 TAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGC 155417 || || ||||||| || ||||| ||| || ||||| | || ||||| | | Sbjct 1732 TAGGTACGGATGGCGCTCTCGATGTCCTCTTTGTGAATGCCGATGGAGACACGCATGATC 1791 Query 155418 ATGTGTTGAATGCGCTCC 155435 ||||| || ||||||| Sbjct 1792 ATGTGCTGTGGGCGCTCC 1809 >seq7946 Length=2495 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| || ||||| || | | |||||| ||||||| | ||||| || ||| | Sbjct 392 TCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAG 333 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | || ||||| || |||||||| ||||| || ||||| || |||||||| || Sbjct 332 ATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTT 273 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | | || || || | || | ||| || ||||||||||| |||||| Sbjct 272 TCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACG 213 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 212 AAGATTTGCAT 202 >seq1170 Length=16159 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| || || || |||| ||| | || ||||||||||||||||||||||| | Sbjct 6719 CCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 6778 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | ||||| | ||| ||||| || | || | || || || || |||||| Sbjct 6779 AGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGGA 6838 Query 64337 ATTCCTTCTTTTTCTTGTATT 64357 ||||||||||| ||||| ||| Sbjct 6839 ATTCCTTCTTTGTCTTGAATT 6859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499588458803240