Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7946 118 8e-22 seq1170 95.1 9e-15 >seq7946 Length=2495 Score = 118 bits (130), Expect = 8e-22 Identities = 157/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC--GTCTT 15025 ||||| || | ||| | || ||||| || ||||| ||| || ||| ||| ||||| Sbjct 410 ACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCG--GACAATGTGCGCCCGTCTT 353 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| || ||||| | ||||| || || || || ||||| ||||||||||| Sbjct 352 CCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTT 293 Query 15086 AAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||||| || |||| || |||||||| ||||||||| | ||| ||||| Sbjct 292 GGATCTTTTGCTTC--ACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGT 235 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| |||| ||| ||||| || ||||||||| Sbjct 234 TTTACCGGTCAAAGTCTTTACGAAGATTTGCATA 201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | ||||| || | ||| | || ||||| || ||||| ||| | Sbjct 200 CCACCACGTAAGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCG--G 143 Query 15010 AGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| |||||| ||||| || ||||| | ||||| || || || || | Sbjct 142 ACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAG 83 Query 15068 GAATTCCTTCCTTGTCACAAAT--TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||| ||||||||||| || ||||||| || |||| || |||||||| ||| Sbjct 82 GAATGCCTTCCTTGTCTTGGATCTTTTGCTTC--ACGTTTTCGATGGTATCGCTTGGTTC 25 Query 15126 TACGTCTAAGGTAATGGTTTTACC 15149 |||||| | ||| ||||||||||| Sbjct 24 TACGTCAAGGGTGATGGTTTTACC 1 >seq1170 Length=16159 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 ||| || || || |||| ||||||||| | || || |||||||| ||||||||||| Sbjct 6718 GCCGCCGCGTAACCTTAGAACTAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCCGA 6777 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | | ||||| || |||||||| ||| ||||||| | ||||| || || Sbjct 6778 CAGAGTACGCCCATCTTCCAACTGTTTGCCCGCGAATATCAACCTTTGTTGATCTGGAGG 6837 Query 15069 AATTCCTTCCTTGTC 15083 ||||||||| ||||| Sbjct 6838 AATTCCTTCTTTGTC 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357352707094985