Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6149 178 1e-39 seq7946 111 1e-19 >seq6149 Length=3715 Score = 178 bits (196), Expect = 1e-39 Identities = 936/1477 (63%), Gaps = 62/1477 (4%) Strand=Plus/Minus Query 122847 TATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGA--GGAAAAGGTCG 122904 || ||||| | ||| ||| | || || |||||| |||||| | || ||| ||| Sbjct 1868 TACTTTGGCTTCAAGACGCTTGAGCGCGCGTATTTGTTGAAAATCAACGGGGAAA--TCG 1811 Query 122905 CCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCG 122964 || || || || ||| ||||||| ||| | || ||| | ||| | ||||||| Sbjct 1810 TGGAGCGCCCACAGCACATGATCATGCGTGTCTCCATCGGCATTCACAAAGAGGACATCG 1751 Query 122965 AAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCA 123024 | | ||| | | || ||||| |||||| ||| | ||||| ||||| | || | Sbjct 1750 AGAGCGCCATCCGTACCTACGACTTGATGAGCAAAATGATGTTCACTCACGCTACACCAA 1691 Query 123025 CTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGC 123084 | |||||| |||||| || | || || ||| | ||||| || | | ||| || Sbjct 1690 CGTTGTTCAACGCCGGTACCCCGCGCCCACAATTGGCCTCGTGCTTCCTTGTTACCATGA 1631 Query 123085 GCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAAT 123144 || ||| ||| |||||| || || || ||| ||||| | || ||| | Sbjct 1630 AGGATGACTCGATCGACGGTATTTACGACACCTTGAAGTCGTGCGCTTGCATAAGCAAGT 1571 Query 123145 TTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAA 123204 || || ||||| ||| | | || ||| || | | | || ||| ||| | Sbjct 1570 ATGCTGGTGGCATCGGCCTTAGTGTCCACAACATCCGTAGTACTGGTAGCTACATTCGTG 1511 Query 123205 GCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGC 123264 |||| ||||| | ||| ||| | | ||||| |||| | |||| || ||| | Sbjct 1510 GCACGAACGGATCAAGCAACGGCATCGTACCTATGCTAAGAGTCTTCAATGACACCGCAC 1451 Query 123265 GGCACGTCGACCA---GGGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGT 123321 | |||| ||||| |||||||||||||||||| | | || || || | ||||| | Sbjct 1450 GCTACGTAGACCAAGGGGGCGGCAAACGCAAAGGGTCTTTCGCCATTTACTTGGAACCAT 1391 Query 123322 GGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC-ATGGGGGCGGAAGAAAAG 123380 |||| || || | ||| || || |||| || ||| |||||| || || | | Sbjct 1390 GGCATTCGGACGTCTTCGAATTCTTGGATTTGAAGAAAAACCATGGGGACGAAA---ATG 1334 Query 123381 AAAGCCCGCG--ATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAA 123438 || |||| | ||||| ||||| | ||| ||||||| ||||| ||| || ||| Sbjct 1333 CCCGCGCGCGTGACTTGTTCTACGCCATGTGGATACCCGACTTGTTCATGAAGCGTGTAC 1274 Query 123439 AAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC-GGCTTGAGCGACGTT 123497 ||| || ||| | || | || ||||| || | | || ||| ||| Sbjct 1273 AAGCAGATAAGCAATGGACCCTATTTTG-CCCGAACGTAGCGCGTGGTTTGCACGATACG 1215 Query 123498 TACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGT 123557 | ||| | |||| || ||||||| | |||||| |||| ||||| || | | Sbjct 1214 TGGGGCGAGGAGTTCGAAACTTTGTACGAAAAGTACGAGAGCGAGGGCAAG--GGCT--T 1159 Query 123558 CAGG----TTCCGGCACGTGATTTGT---TCAAATTTATTATCGAAACACAAGTCGAAAC 123610 |||| ||| || | || |||| ||||| || ||||||| ||||| ||||| Sbjct 1158 CAGGACCGTTCGTGCGCAAGAGTTGTGGTTCAAA---ATAATCGAAAGTCAAGTTGAAAC 1102 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 ||||| || |||||||| ||||||||||| |||||| | ||| |||| || ||||| Sbjct 1101 TGGAACCCCATACATGCTTTACAAAGACGCGTGCAACCGTAAATCCAACCAACAAAACTT 1042 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||| || || ||| |||| ||| | ||| | ||||| ||||| |||| || | ||| | Sbjct 1041 GGGCACCATTAAAAGTAGCAATTTGTGCACTGAAATCATCGAGTACACCGCACCTGATGA 982 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTG-----CGTGAATCGTTG----------CGT 123775 | | || || ||||| |||||| ||||| | ||| || | || Sbjct 981 AATCGCAGTTTGTAACTTGGCTAGTATTTGTCTTCCAAAAATGGTCGACCAAAGCAACGA 922 Query 123776 CGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG-- 123833 || || | || || ||||||| ||| || ||| | || ||| | | Sbjct 921 GGACAAACCAGTTTACAACTTCCAAATGCT-TTTCG-ATATCGTCAA-GCAAGTTACGAT 865 Query 123834 -AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAA 123892 || |||||| | || ||||| || | || || | | ||||| | || || Sbjct 864 CAACTTGAACCGTGTAATTGATGTCAACTACTACCCAGTAAAAGAAGCTGAGTACTCCAA 805 Query 123893 TTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCT 123952 |||| |||| | || | || ||||| | ||||| || || ||||| || | ||| | Sbjct 804 CTTGAGACACCGTCCAATTGGTTTGGGCGTACAAGGTTTAGCTGACGCATTCATCATGAT 745 Query 123953 GCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAAT 124012 ||||||||||| |||||| || | ||| | ||| || | | || ||| || || Sbjct 744 GCGCATGCCGTTCGAAAGTGAAGCAGCCTTGCAGCTAAACAAAGATATTTTCGAGACCAT 685 Query 124013 TTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAG 124072 ||| | || ||||||| || ||||||| ||||||| ||| ||||| | | Sbjct 684 TTACTTCGCCGCTTTGACCGCTTCCTGCGAAGAAGCGAAAAGGTTCGGACCGTACAAGAC 625 Query 124073 TTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACC 124132 |||| |||||| || | || ||| || ||||| || |||||| | |||||| Sbjct 624 GTACGAGGGCAGTCCAGTCAGTAAAGGCATCTTGCAACCAGATATGTGGGGCGTTACACC 565 Query 124133 GACAAATTTGTGGGACTGGAGCGTTTTAAAACAACG----CATATCGA--CGCACGGTTT 124186 | | ||||| ||| || ||| ||| | ||| | ||||| | Sbjct 564 TTCTGACCGATGGGATTGG-GC-----TGAACTACGTGCCAACATCAAACAACACGGAGT 511 Query 124187 GCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAA 124246 || ||||| ||||||| || ||||| || ||| | || | |||||| | || || Sbjct 510 ACGCAACTCTTTGTTGGTTGCACCAATGCCAACCGCATCAACCTCGCAAATTATGGGCAA 451 Query 124247 CAACGAATCCTTCGAGCCGTTCACTAACAATTTGTAC 124283 ||||| | ||||||||| | ||| ||| ||||| Sbjct 450 TAACGAGTGCTTCGAGCCTTACACCTCCAACATGTAC 414 >seq7946 Length=2495 Score = 111 bits (122), Expect = 1e-19 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| ||||| || || | | |||| |||| |||| |||||||||||||| || Sbjct 435 TTATTGACCTCCTCGTAGGCGAAGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTA 376 Query 45167 ATCGCTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 ||| ||| | | | || |||||||| ||||| || | |||||||||||||| Sbjct 375 GTCG--GACAATGTGCGCCCGTCTTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGA 318 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || ||||||||||| || ||||| || ||||| || | ||| | ||| ||| Sbjct 317 TCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTT 258 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || | ||||| ||||| | ||| ||||| || |||||||| Sbjct 257 GGTTCTACGTCAAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 202 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 |||| |||| |||| |||||||||||||| || ||| ||| | | | || | Sbjct 182 ACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCG--GACAATGTGCGCCCGTCTT 125 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| ||||| || | |||||||||||||| || || ||||||||||| || |||| Sbjct 124 CCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCTT 65 Query 45250 GAATTTTTTGTTT 45262 | || ||||| || Sbjct 64 GGATCTTTTGCTT 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451952230989160