Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6149 111 2e-19 >seq6149 Length=3715 Score = 111 bits (122), Expect = 2e-19 Identities = 534/840 (64%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| ||||| || | | | ||||| | |||||||| || ||||| || |||||| Sbjct 961 GCCAAGTTACAAACTGCGATTTCATCAGGTGCGGTGTACTCGATGATTTCAGTGCACAAA 1020 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || ||| ||||||||||||||||| | ||| || || || ||| ||||| || ||| Sbjct 1021 TTGCTACTTTTAATGGTGCCCAAGTTTTGTTGGTTGGATTTACGGTTGCACGCGTCTTTG 1080 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT--TCCATACAT 116617 || ||||| ||||| || || || || || ||||| || || | ||| | | Sbjct 1081 TAAAGCATGTATGGGGTTCCAGTTTCAACTT--GACTTTCGATTATTTTGAACCACAACT 1138 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | || | || || | | | ||||| |||||||||| ||| | | | Sbjct 1139 CTTGCGCACGAACGGTCCTGAAGCCCTTGCCCTCGCTCTCGTACTTTTCGTACAAAGTTT 1198 Query 116678 CAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACC 116737 | ||||| || ||| | || | || | || | || || || || | || Sbjct 1199 CGAACTCCTCGCCCCACGTATCGTGCAAACCACGCGCTACGTTCGGGCAAAATAGGGTCC 1258 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 |||| | | | | || ||||||||||| | ||| || ||||| | || |||| | Sbjct 1259 ATTGCTTATCTGCTTGTACACGCTTCATGAACAAGTCGGGTATCCACATGGCGTAGAACA 1318 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 || || ||| || | ||| ||||| || || ||| ||||| || || | || Sbjct 1319 AGTCACGCGCGCGGGCATTTTCGTCCCCATGGTTTTTCTTCAAATCCAAGAATTCGAAGA 1378 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914 |||| ||||| ||||||| ||| | |||| ||||| ||||| | || | | Sbjct 1379 CGTCCGAATGCCATGGTTCCAAGTAAATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTT 1438 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| ||| || | || || | || || || | ||||| || | ||| || | | || Sbjct 1439 GGTCTACGTAGCGTGCGGTGTCATTGAAGACTCTTAGCATAGGTACGATGCCGT-TGCTT 1497 Query 116975 G-GCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCT-CTGACATCGTGGATGTGCATAC 117031 | || || || || ||||| | || || || | || | ||||| | | Sbjct 1498 GATCCGTTCGTGCCACGAATGTAGCTACCAGT--ACTACGGATGTTGTGGACACTAAGGC 1555 Query 117032 CAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCAT 117091 | || || || || |||| || |||||| | | | || |||| || || | Sbjct 1556 CGATGCCACCAGCATACTTGCTTATGCAAGCGCACGACTTCAAGGTGTCGTAAATACCGT 1615 Query 117092 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTAC 117151 ||||||||||| |||| | | | |||||||| | || |||||| | || |||| Sbjct 1616 CGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGAGGCCAATTGTGGGCGCGGGGTAC 1675 Query 117152 CAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGG 117211 | |||||||| | |||||||| ||||| ||||||| || | |||| ||||||| Sbjct 1676 CGGCGTTGAACAACGTTGGTGTAGCGTGAGTGAACATCATTTTGCTCATCAAGTCGTAGG 1735 Query 117212 TCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGT 117271 | | | | ||||| || |||||| ||||| ||||| ||||| | ||||| Sbjct 1736 TACGGATGGCGCTCTCGATGTCCTCTTTGTGAATGCCGATGGAGACACGCATGATCATGT 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613438019394360