Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7946 129 1e-24 >seq7946 Length=2495 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || | ||||||||||| |||||||| | ||| || | || ||| Sbjct 413 AGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCT 354 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| || ||||| | || ||||| || ||| ||| ||||| || Sbjct 353 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCT 294 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||||||| ||||| ||| || ||| |||||| || | ||||| || Sbjct 293 TGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTT 234 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||| || || || ||||| Sbjct 233 TTACCGGTCAAAGTCTTTACGAAGATTTG 205 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || | ||||||||||| |||||||| | ||| || | || ||| Sbjct 185 AGGACTAAGTGCAAGGTTGCCTCCTTTTGGATATTGTAGTCGGACAATGTGCGCCCGTCT 126 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| || ||||| | || ||||| || ||| ||| ||||| || Sbjct 125 TCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGATCTGGAGGAATGCCTTCCTTGTCT 66 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||||||| ||||| ||| || ||| |||||| || | ||||| || Sbjct 65 TGGATCTTTTGCTTCACGTTTTCGATGGTATCGCTTGGTTCTACGTCAAGGGTGATGGTT 6 Query 199598 TTACC 199602 ||||| Sbjct 5 TTACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178785338399407