Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6191 215 4e-50 seq5593 102 6e-16 >seq6191 Length=3651 Score = 215 bits (238), Expect = 4e-50 Identities = 964/1497 (64%), Gaps = 50/1497 (3%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || ||||| ||| | ||| | ||||| || ||||| || ||||| | || | || ||| Sbjct 449 GTGGATTTCTCAACCGCACTGACATTTAGGATACCGTTAGCATCGATGTCGTAGGTAACT 508 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCA--GGTGGGATCCCTTCCAAATTAAATGTTCCCA 517361 || ||||| || || ||||| || ||| || || || || ||||| | |||| | |||| Sbjct 509 TCGATTTGTGGTACACCTCT-TG-GCATTGGAGGAATGCCATCCAAGTGAAATTTGCCCA 566 Query 517362 GATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAG 517421 || || || || | || ||||||||||| | |||||| || | | Sbjct 567 ACAAGTTGCAGTCCTTGGTCATCGCACGCTCACCCTCGAATACTTGGATCAATACACCTG 626 Query 517422 TTTGATTATCTGAATAAGTTGTAAATACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTT 517480 || ||||| | || || | || | | || | ||||| || | || |||||| Sbjct 627 GCTGGTTATCAGCGTATGTACTGAA-AGTTTGACTCTTTTTGGTTGGTACAGTCGTGTTT 685 Query 517481 CTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTG 517540 || | || | ||||| | ||||||||| ||||| | ||||||| | || || Sbjct 686 CTCTTGATTAGCGCAGTCATGACACCACCTGCAGTTTCAATACCAAGACTCAATGGGGTT 745 Query 517541 ACATCAA-CTAGGACAATATTTTGAAGTTTTTCATCAGT-TTGACCAACA---AGAATAG 517595 ||||| | | | |||| | ||||| ||| |||| || || || |||| Sbjct 746 ACATCGAGCAACAACAAGTCGTCCAAGTTGG-----AGTCTTGAACACCACTGAGGATAG 800 Query 517596 CTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTT 517655 | ||||| | | |||||| |||||||||||||| || || || | ||| ||| | | Sbjct 801 CGGCTTGCACGGTAGCACCGTATGCAACAGCTTCGTCTGGGTTGATGCTTTTGTTTGGGT 860 Query 517656 TTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC--CTTAGGAATACGAGATGATCC 517713 ||| |||||||| || ||| || || || | ||| |||||||| | || Sbjct 861 CTTTGCCATTGAAGAA--TTGCTTCAACATGCTTTGCAACTTTGGAATACGTGTACTGCC 918 Query 517714 TCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTT--GAATCCAATAAAACT 517771 || || || |||| ||| | || | ||| | || | | | || || ||| Sbjct 919 ACCTACCAAAACAACTTCGTCAAC--GCGATCCTTGGAGATCTTCGCGTCACGTAGAACC 976 Query 517772 TTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAG 517829 ||||| || || || | | | | || |||| || || ||| ||||| || Sbjct 977 TTTTCGACTGGCTCCAAGCACTTGCGGAAGTAGTCCATGTTCAT--TTCCTCGAAGCGAG 1034 Query 517830 CTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTA- 517888 | | || | ||| | ||||||| || ||||| | || |||| || || ||| Sbjct 1035 CACGCGTGATGGTGGATTGGAAATCAATGCCATCGAATAGCGAGTCAATCTCGAT-GTAT 1093 Query 517889 GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGT 517948 | ||| || |||||||| | | | || || | ||| |||| || | || | ||| Sbjct 1094 GCTTGGGTAGAAGAAGACAAGGTCCTCTTTGCTCTTTCGCATGACGTGCGAAGACGACGT 1153 Query 517949 AAGGCTTTTGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACAC 518006 | ||| ||| || | ||| | || | | |||||||||||| |||| Sbjct 1154 AGGGCAC--GCTCGTTCTTGGAAAGGTCCTTCCTGTTTTTTCTCTTGAACTCTTGTTTGA 1211 Query 518007 ACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGT 518064 | || | || | || || || |||||||| || |||| | || | |||| || Sbjct 1212 AG--TGATCGACCATGCGGTTGTCGAAATCTTCGCCACCCAGGTGCGTGTCCCCTGCGGT 1269 Query 518065 AGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACC 518124 ||| |||||| |||| |||||||| | | ||| | | |||||| || || || Sbjct 1270 TGCTTTTACTTCAAAAATACCATCTTCGATGGTCAACAACGATACATCGAATGTACCTCC 1329 Query 518125 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGC 518184 ||||| || || || | || ||| |||| ||| | || || ||||| || || Sbjct 1330 ACCCAAGTCGAAGATCAAAACGTTCTTTTCGCCACCTT---TCTTGTCTAGACCGTAAGC 1386 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 | ||||| || |||||||| |||||||| | ||| || || |||||||| || |||| Sbjct 1387 GATCGCAGCTGCTGTTGGTTCGTTAATAATACGCAAGACGTTCAGACCAGCGATGGTTCC 1446 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||||| || ||||| | ||| || ||||| || |||||||| || || ||||| || Sbjct 1447 AGCATCTTTGGTTGCTTGACGTTGGGAGTCGTTGAAGTATGCAGGTACGGTGATAACAGC 1506 Query 518305 ATCAGTTACTTCTTTACCAATATAAGCGCTTGC--CGTTTGTTTCATTTTACTTAAAATC 518362 || || | |||| || || ||| || || |||||||| | || | | Sbjct 1507 GGACTGAACATCGGTGCCAAGGTATGCTTCTGCGACGGTT--TTCATTTTGGTCAATACC 1564 Query 518363 ATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATA-TGATACTTCAAA 518421 || | |||| ||| | | ||| || || || || ||| ||||| | Sbjct 1565 ATAGCACTGATTTCTTCGGCACCAAATTCTTTCTTCTCGCCTTTGTACTGA-ACTTCGAT 1623 Query 518422 -ATATGGTTT--ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTG 518478 ||| | ||| | | | || | || | || ||||||| ||||||||| || Sbjct 1624 CATAGGTTTTCCACTTGGCCCTTTTTTTACAGTGAAAGGCCAGTGCTTCATATCTTTCTG 1683 Query 518479 AACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGT 518538 ||| | |||||| ||||| | ||||| || || || ||||| || | ||| || | Sbjct 1684 TACATCTGGGTCATCAAAATTGCGTCCAATCAAACGCTTGGCATCGAATACAGTGTTCAT 1743 Query 518539 TGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAA 518598 ||| || |||| | |||||| || || || | ||||||| | | || | || || || Sbjct 1744 TGGGTTCATTGAAACTTGATTCTTCGCCGCGTTACCAATCAAACGCTCAGATTCGGTGAA 1803 Query 518599 TGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACC 518658 | ||| || ||||| || || ||| |||||||||| || ||||||||||| || | Sbjct 1804 GGCAACGTACGATGGGGTCGTACGAGTACCTTGATCGTTTGCAATAATTTCTACCTGGTT 1863 Query 518659 ATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAAT 518715 |||| ||| |||| |||||| | ||||| || || |||||||| | |||||| Sbjct 1864 GTTTTTCCAGGCACCAACACAAGAGTAGGTTGTACCCAAGTCAATACCTACAGCAAT 1920 >seq5593 Length=4069 Score = 102 bits (112), Expect = 6e-16 Identities = 225/335 (67%), Gaps = 7/335 (2%) Strand=Plus/Plus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||| || || |||||||| ||||| | |||| ||| | ||||| | || | ||| | Sbjct 2923 ATTGTCGAAGTCTTCACCACCCAAATGTGTATCTCCAGCAGTAGCCTTCACCTCGAATAT 2982 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || | |||| | ||| | | ||||| ||| || || |||| ||| || | | Sbjct 2983 GCCTTTCTCAATTGCCAAGATGGAAACATCGAAGGTACCTCCGCCCAAATCGAATACCAA 3042 Query 518143 TACATTCAT--TTCTTTGT---CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 | |||| | | ||||| ||| || | ||| |||||||| || || || || ||| Sbjct 3043 AATATTCTTGGTGGTTTGTTCACTT--TTGTCATCTAGACCATAAGCCAATGCCGCCGCA 3100 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | || || | ||| |||||||| ||||| || || || Sbjct 3101 GTTGGCTCGTTGATGATACGCATGACTTCAAGGCCAGCAATGGCACCTGCGTCCTTTGTT 3160 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 ||| | |||||||| | ||||||||||||||||| || || || | | ||||| Sbjct 3161 GCTGCCCGCTGTGAATCACTGAAATATGCAGGAACAGTGATGACAGCCTTCTTGACTTCG 3220 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 | || | | | | ||| ||||||||||||| Sbjct 3221 TGCCCTAAAAATGTTTCTGCGATTTGTTTCATTTT 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780374748264826