Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6149 131 2e-25 >seq6149 Length=3715 Score = 131 bits (144), Expect = 2e-25 Identities = 472/728 (65%), Gaps = 19/728 (3%) Strand=Plus/Plus Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386 ||||||| || | ||||| || ||||| ||| ||| |||||| |||||||| | | Sbjct 992 CGGTGTACTCGATGATTTCAGTGCACAAATTGCTACTTTTAATGGTGCCCAAGTTTTGTT 1051 Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446 | || ||||| |||||| || || || || |||||||||||||| |||||||| || Sbjct 1052 GGTTGGATTTACGGTTGCACGCGTCTTTGTAAAGCATGTATGGGGTTCCAGTTTCAA-CT 1110 Query 110447 GTGACTTGAGAATGGCCTT--CCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACC 110504 |||||| || | | ||| | || || | || || | | | || || Sbjct 1111 -TGACTTTCGATTATTTTGAACCACAACTCTTGCGCACGAACGGT--CCTGA---AGCCC 1164 Query 110505 TT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 || |||| ||||||||| |||||| || || |||| || || ||| Sbjct 1165 TTGCCCTCGCTCTCGTACTTTTCGTACAAAGTTTCGAACTCCTCGCCCCACGTATCGTGC 1224 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 | ||| ||| || || || || |||| ||| | | | | | || | |||| Sbjct 1225 AAACCACGCGCTACGTTCGGGCAAAATAGGGTCCATTGCTTATCTGCTTGTACACGCTTC 1284 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 ||||||| ||| || |||||||| || |||| | |||||| || || | ||| || Sbjct 1285 ATGAACAAGTCGGGTATCCACATGGCGTAGAACAAGTCACGCGCGCGGGCATTTTCGTCC 1344 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| | ||||| || || | || ||||| ||||||||||| | || Sbjct 1345 CCATGGTTTTTCTTCAAATCCAAGAATTCGAAGACGTCCGAATGCCATGGTTCCAAGTAA 1404 Query 110740 ACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| || || || || | ||| | |||| || |||||||| ||| ||||| Sbjct 1405 ATGGCGAAAGACCCTTTGCGTTTGCCGCCCCCTTGGTCTACGTAGCGTGCGGTGTCATTG 1464 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGA-CCATTTGTACCCCTAATTCTGGA 110855 ||||| || |||||||| | || || | | |||| || || || || | ||| | Sbjct 1465 AAGACTCTTAGCATAGGTACGATGCCGT-TGCTTGATCCGTTCGTGCCACGAATGTAGCT 1523 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | | ||| |||| ||||| | | || || ||||| || |||| || || Sbjct 1524 ACCAGTACTACGGATGTTGTGGACACTAAGGCCGATGCCACCAGCATACTTGCTTATGCA 1583 Query 110916 TGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 || ||| | | || | |||||||| || ||||| || |||| ||| || || Sbjct 1584 AGCGCACGACTTCAAGGTGTCGTAAATACCGTCGATCGAGTCATCCTTCATGGTAACAAG 1643 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 ||||| || | || || || || || || || || ||||| | || ||||| || || Sbjct 1644 GAAGCACGAGGCCAATTGTGGGCGCGGGGTACCGGCGTTGAACAACGTTGGTGTAGCGTG 1703 Query 111036 AATGAACA 111043 | |||||| Sbjct 1704 AGTGAACA 1711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588909585593800