Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG41- 1_20[genbank_20GCA_5F900128575.1_202016-12-02] 9,021 sequences; 30,044,774 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq8913 147 3e-30 >seq8913 Length=774 Score = 147 bits (162), Expect = 3e-30 Identities = 440/667 (66%), Gaps = 38/667 (6%) Strand=Plus/Plus Query 154460 TTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGC 154519 ||| || |||||||||||| |||| |||| | |||||| |||||| ||||||||| Sbjct 82 TTGTACTATGAAATTAAATTCAGCGTTAGAAATGGAGCCTGTTTCATGGCCAGAGTTTGC 141 Query 154520 TAACGTGCATCCACATACACCTATGATACAGACCATG-----GGTTATCAGAAAATTATA 154574 ||||| |||||| | |||| || |||| | ||||| | |||| || Sbjct 142 AAACGTCCATCCATTTGCACCGG-----CACACCAAGTTACTGGTTACAAAGAAATGATT 196 Query 154575 GATGACTTACAGAA--ATG-GTTATGTGATATCACAGGGTTTGATTCTATATCATTACAA 154631 ||| | || ||| ||| | | || || || ||||| | | ||||| ||| Sbjct 197 GAT---TCACTGAATTATGCGCTGGCAGAAATAACGCAGTTTGCTGCAGTATCAACACAG 253 Query 154632 CCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAA 154691 ||||| |||| | || |||||||| || |||| || | | | | ||||| Sbjct 254 CCTAATTCAGGTGCGTCTGGCGAGTATGCTGGTTTGTTTTGTATTC--GTA-AGTATCAA 310 Query 154692 G--GATCA-GGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACT 154748 | | ||| || | | ||||| | ||||| || ||| ||||| |||||||| Sbjct 311 GAGGCTCAAGGTCAATCCCACCGAAATATTTGTTTAATTCCATTATCAGCGCATGGAACA 370 Query 154749 AATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGAT 154808 | || || || || |||||||| || |||||||| || ||| ||| | || ||| | Sbjct 371 ACCCCAGCAAGCGCCGTCATGGCTGGAATGAAAGTGGTCACTGTAAAGAGCGACGATCTT 430 Query 154809 GGTAACATAGACATCAAAGATCTA---GAGAAG-----AAAGCAATCATGAATACATTTG 154860 |||||||| || || | || ||| | |||| |||||| | ||| || ||| Sbjct 431 GGTAACATTGATGTCGATGACCTAAGTGCGAAGGCAGAAAAGCACAAA-GAAAAC--TTG 487 Query 154861 AACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA 154920 | || || ||| |||||||||||||||| |||||||||||||| |||| Sbjct 488 AG-TGCGTTG----ATGGTTACATACCCATCTACGTATGGTGTATTTGAAGAAGGCATTG 542 Query 154921 GACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATC 154980 | | || | || || ||| || ||||| || || ||| | || || ||||| Sbjct 543 TAGAAATTATCGATATTGTCCATAGTAACGGTGGGCAAGTCTATATGGACGGTGCAAACA 602 Query 154981 TAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAA 155040 | || || || || || || | ||| | | || |||||||| || ||||||| Sbjct 603 TGAACGCCCAAGTTGGGCTCTGCAGCCCAGGAAAAATCGGCGCAGATGTCTGCCATCTAA 662 Query 155041 ACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAG 155100 | ||||| ||||| ||||| ||||||||||| ||||| || || || || || |||| | Sbjct 663 ATTTACACAAAACCTTCTGCATTCCACATGGCGGTGGGGGGCCGGGTGTCGGATCTATTG 722 Query 155101 GTGTAGC 155107 | || || Sbjct 723 GGGTTGC 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579147486516640